| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_15010 | | ATP-dependent RNA helicase RhlE | 1.0 | CSW01_12735 | | RidA family protein | 0.68 | 2 |
| Shewanella loihica PV-4 | 0.64 | Shew_0604 | | DEAD/DEAH box helicase domain-containing protein (RefSeq) | 0.41 | Shew_3500 | | putative endoribonuclease L-PSP (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.62 | SO3783 | | ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) | 0.39 | SO1404 | | endoribonuclease L-PSP, putative (NCBI ptt file) | low | > 76 |
| Marinobacter adhaerens HP15 | 0.60 | HP15_3607 | | DEAD/DEAH box helicase domain protein | 0.43 | HP15_306 | | YjgF-like protein | low | > 73 |
| Shewanella amazonensis SB2B | 0.57 | Sama_2687 | | DEAD-box ATP dependent DNA helicase (RefSeq) | 0.39 | Sama_0263 | | YjgF-like protein (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.55 | MIT1002_03342 | | ATP-dependent RNA helicase RhlE | 0.37 | MIT1002_00109 | | Putative reactive intermediate deaminase TdcF | low | > 70 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS08915 | | ATP-dependent RNA helicase RhlE | 0.78 | BWI76_RS02985 | | reactive intermediate/imine deaminase | low | > 92 |
| Escherichia coli ECOR38 | 0.53 | HEPCGN_01750 | rhlE | ATP-dependent RNA helicase RhlE | 0.81 | HEPCGN_10070 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 88 |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS08785 | | ATP-dependent RNA helicase RhlE | 0.74 | HGI48_RS01890 | | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS09075 | | ATP-dependent RNA helicase RhlE | 0.75 | DZA65_RS01960 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Escherichia coli Nissle 1917 | 0.53 | ECOLIN_RS04245 | | ATP-dependent RNA helicase RhlE | 0.81 | ECOLIN_RS24615 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 55 |
| Escherichia coli ECRC102 | 0.53 | NIAGMN_04335 | rhlE | ATP-dependent RNA helicase RhlE | 0.81 | NIAGMN_09725 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.53 | OHPLBJKB_02916 | | ATP-dependent RNA helicase RhlE | 0.81 | OHPLBJKB_03791 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Escherichia coli ECRC99 | 0.53 | KEDOAH_21620 | rhlE | ATP-dependent RNA helicase RhlE | 0.81 | KEDOAH_16280 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Escherichia coli BL21 | 0.53 | ECD_00764 | | ATP-dependent RNA helicase | 0.81 | ECD_04111 | | enamine/imine deaminase, reaction intermediate detoxification | low | > 61 |
| Escherichia coli BW25113 | 0.53 | b0797 | rhlE | RNA helicase (NCBI) | 0.81 | b4243 | yjgF | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli ECRC101 | 0.53 | MCAODC_25505 | rhlE | ATP-dependent RNA helicase RhlE | 0.81 | MCAODC_02380 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 88 |
| Escherichia fergusonii Becca | 0.53 | EFB2_03308 | | ATP-dependent RNA helicase RhlE | 0.81 | EFB2_04290 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Escherichia coli ECOR27 | 0.53 | NOLOHH_22645 | rhlE | ATP-dependent RNA helicase RhlE | 0.81 | NOLOHH_04135 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 76 |
| Escherichia coli ECRC98 | 0.53 | JDDGAC_09925 | rhlE | ATP-dependent RNA helicase RhlE | 0.81 | JDDGAC_15515 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 87 |
| Escherichia coli ECRC62 | 0.53 | BNILDI_20925 | rhlE | ATP-dependent RNA helicase RhlE | 0.81 | BNILDI_07375 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Escherichia coli ECRC100 | 0.53 | OKFHMN_06290 | rhlE | ATP-dependent RNA helicase RhlE | 0.81 | OKFHMN_11875 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 79 |
| Rahnella sp. WP5 | 0.53 | EX31_RS23775 | | ATP-dependent RNA helicase RhlE | 0.74 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 89 |
| Erwinia amylovora T8 | 0.53 | OLJFJH_16685 | | ATP-dependent RNA helicase RhlE | 0.74 | OLJFJH_07320 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 58 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF696 | | ATP-dependent RNA helicase RhlE | 0.76 | GFF928 | | Endoribonuclease L-PSP | low | > 78 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_06620 | | ATP-dependent RNA helicase RhlE | 0.69 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 86 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_2194 | | Superfamily II DNA and RNA helicases | 0.77 | EX28DRAFT_3444 | | reactive intermediate/imine deaminase | low | > 76 |
| Erwinia tracheiphila HP pepo 2.2 | 0.52 | IJEDHG_19640 | rhlE | ATP-dependent RNA helicase RhlE | 0.73 | IJEDHG_14050 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | — | — |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_01425 | | ATP-dependent RNA helicase RhlE | 0.79 | MPMX20_00542 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS09215 | rhlE | ATP-dependent RNA helicase RhlE | 0.73 | LU632_RS20960 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Klebsiella pneumoniae MKP103 | 0.52 | KDGMDA_17180 | | ATP-dependent RNA helicase RhlE | 0.78 | KDGMDA_11455 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 95 |
| Pantoea agglomerans CFBP13505 P0401 | 0.52 | PagCFBP13505_RS03875 | | ATP-dependent RNA helicase RhlE | 0.77 | PagCFBP13505_RS08965 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.74 | 22 |
| Dickeya dadantii 3937 | 0.52 | DDA3937_RS08645 | | ATP-dependent RNA helicase RhlE | 0.74 | DDA3937_RS01915 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 74 |
| Pantoea sp. MT58 | 0.52 | IAI47_13435 | | ATP-dependent RNA helicase RhlE | 0.78 | IAI47_16870 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.52 | HER17_RS13325 | | ATP-dependent RNA helicase RhlE | 0.72 | HER17_RS19520 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 75 |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS02695 | | RNA helicase | 0.29 | RS_RS23660 | | RidA family protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.50 | QEN71_RS02265 | | DEAD/DEAH box helicase | 0.40 | QEN71_RS41190 | | RidA family protein | — | — |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS12515 | | DEAD/DEAH box helicase | 0.39 | ABCV34_RS03565 | | Rid family detoxifying hydrolase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS26425 | | DEAD/DEAH box helicase | 0.42 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.50 | HSERO_RS08565 | | RNA helicase | 0.22 | HSERO_RS05705 | | endoribonuclease L-PSP | low | > 78 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS26425 | | DEAD/DEAH box helicase | 0.42 | PFLU_RS29515 | | RidA family protein | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_1409 | | ATP-dependent RNA helicase PA3950 | 0.43 | PfGW456L13_779 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 87 |
| Methylophilus sp. DMC18 | 0.50 | GFF250 | | ATP-dependent RNA helicase RhlE | 0.46 | GFF1301 | | 2-iminobutanoate/2-iminopropanoate deaminase | low | > 43 |
| Pseudomonas fluorescens FW300-N2E2 | 0.50 | Pf6N2E2_5046 | | ATP-dependent RNA helicase PA3950 | 0.44 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | low | > 103 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_0320 | | Superfamily II DNA and RNA helicases | 0.39 | B158DRAFT_0573 | | endoribonuclease L-PSP, putative | low | > 40 |
| Pseudomonas fluorescens FW300-N2C3 | 0.50 | AO356_15530 | | DEAD/DEAH box helicase | 0.43 | AO356_12475 | | reactive intermediate/imine deaminase | low | > 104 |
| Dechlorosoma suillum PS | 0.49 | Dsui_3174 | | DNA/RNA helicase, superfamily II | 0.37 | Dsui_0312 | | endoribonuclease L-PSP, putative | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS08975 | | DEAD/DEAH box helicase | 0.45 | ABZR86_RS11845 | | RidA family protein | low | > 74 |
| Rhodanobacter sp000427505 FW510-R12 | 0.44 | LRK53_RS07310 | | DEAD/DEAH box helicase | 0.40 | LRK53_RS16740 | | RidA family protein | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS02395 | | DEAD/DEAH box helicase | 0.41 | LRK55_RS11525 | | RidA family protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS02640 | | DEAD/DEAH box helicase | 0.41 | LRK54_RS11800 | | RidA family protein | low | > 59 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.44 | CA265_RS16115 | | DEAD/DEAH box helicase | 0.43 | CA265_RS22825 | | reactive intermediate/imine deaminase | low | > 88 |
| Rhodanobacter sp. FW510-T8 | 0.43 | OKGIIK_09690 | srmB | RNA helicase | 0.41 | OKGIIK_12095 | ridA | reactive intermediate/imine deaminase | low | > 53 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.42 | ABZR88_RS16030 | | DEAD/DEAH box helicase | 0.39 | ABZR88_RS17245 | | RidA family protein | — | — |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS03715 | | DEAD/DEAH box helicase | 0.48 | HMPREF1181_RS10885 | | RidA family protein | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.41 | BT1885 | | putative ATP-dependent RNA helicase (NCBI ptt file) | 0.50 | BT1336 | | putative translation initiation inhibitor (NCBI ptt file) | low | > 81 |
| Bacteroides ovatus ATCC 8483 | 0.41 | BACOVA_01521 | | DEAD/DEAH box helicase | 0.50 | BACOVA_00589 | | putative endoribonuclease L-PSP | low | > 96 |
| Parabacteroides merdae CL09T00C40 | 0.41 | HMPREF1078_RS01200 | | DEAD/DEAH box helicase | 0.45 | HMPREF1078_RS02020 | | RidA family protein | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_02200 | | DEAD/DEAH box helicase | 0.38 | CA264_17590 | | RidA family protein | low | > 74 |
| Phocaeicola dorei CL03T12C01 | 0.41 | ABI39_RS02170 | | DEAD/DEAH box helicase | 0.47 | ABI39_RS14715 | | RidA family protein | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS02855 | | DEAD/DEAH box helicase | 0.48 | HMPREF1058_RS18400 | | RidA family protein | low | > 67 |
| Cellulophaga baltica 18 | 0.39 | M666_RS18630 | | DEAD/DEAH box helicase | 0.48 | M666_RS12150 | | RidA family protein | low | > 67 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.39 | Echvi_0511 | | Superfamily II DNA and RNA helicases | 0.43 | Echvi_1327 | | endoribonuclease L-PSP, putative | low | > 79 |
| Sinorhizobium meliloti 1021 | 0.37 | SM_b20880 | | ATP-dependent RNA helicase | 0.24 | SM_b21139 | | translation initiation inhibitors | low | > 103 |
| Dinoroseobacter shibae DFL-12 | 0.35 | Dshi_2715 | | DEAD/DEAH box helicase domain protein (RefSeq) | 0.29 | Dshi_0720 | | Endoribonuclease L-PSP (RefSeq) | low | > 64 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.33 | DVU1982 | rhlE | ATP-dependent RNA helicase RhlE (TIGR) | 0.49 | DVU2203 | | endoribonuclease, L-PSP family (TIGR) | low | > 55 |
Not shown: 2 genomes with orthologs for CSW01_15010 only; 45 genomes with orthologs for CSW01_12735 only