Conservation of cofitness between CSW01_03550 and CSW01_12700 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03550 transcriptional activator protein NhaR 1.0 CSW01_12700 RNA pseudouridine synthase 0.50 12
Serratia liquefaciens MT49 0.68 IAI46_03090 transcriptional activator NhaR 0.46 IAI46_03270 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 86
Enterobacter sp. TBS_079 0.66 MPMX20_00723 Transcriptional activator protein NhaR 0.47 MPMX20_00752 Dual-specificity RNA pseudouridine synthase RluA low > 85
Pectobacterium carotovorum WPP14 0.66 HER17_RS02855 transcriptional activator NhaR 0.48 HER17_RS02985 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF1120 Transcriptional activator NhaR 0.47 GFF184 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 78
Dickeya dadantii 3937 0.66 DDA3937_RS18355 transcriptional activator NhaR 0.47 DDA3937_RS18240 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3629 Transcriptional regulator 0.48 EX28DRAFT_3650 pseudouridine synthase, RluA family low > 76
Klebsiella michiganensis M5al 0.66 BWI76_RS04320 transcriptional activator NhaR 0.48 BWI76_RS04565 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA low > 92
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00110 transcriptional activator NhaR 0.46 ECOLIN_RS00310 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 55
Escherichia fergusonii Becca 0.65 EFB2_04023 Transcriptional activator protein NhaR 0.46 EFB2_03987 Dual-specificity RNA pseudouridine synthase RluA low > 86
Rahnella sp. WP5 0.65 EX31_RS03885 transcriptional activator NhaR 0.49 EX31_RS03750 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 89
Klebsiella pneumoniae MKP103 0.65 KDGMDA_12590 transcriptional activator NhaR 0.48 KDGMDA_12790 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 95
Escherichia coli BW25113 0.64 b0020 nhaR DNA-binding transcriptional activator (NCBI) 0.46 b0058 rluA pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) low > 76
Escherichia coli ECRC62 0.64 BNILDI_08250 nhaR transcriptional activator NhaR 0.46 BNILDI_08455 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_03641 Transcriptional activator protein NhaR 0.46 OHPLBJKB_03600 Ribosomal large subunit pseudouridine synthase A low > 74
Escherichia coli ECOR38 0.64 HEPCGN_09010 nhaR transcriptional activator NhaR 0.46 HEPCGN_08795 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 88
Escherichia coli ECOR27 0.64 NOLOHH_03355 nhaR transcriptional activator NhaR 0.46 NOLOHH_03150 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 76
Escherichia coli BL21 0.64 ECD_00019 transcriptional activator of nhaA 0.46 ECD_00060 dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent low > 61
Escherichia coli ECRC100 0.64 OKFHMN_11025 nhaR transcriptional activator NhaR 0.46 OKFHMN_10805 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 79
Escherichia coli ECRC98 0.64 JDDGAC_14620 nhaR transcriptional activator NhaR 0.46 JDDGAC_14400 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 0.40 32
Escherichia coli ECRC99 0.64 KEDOAH_17130 nhaR transcriptional activator NhaR 0.46 KEDOAH_17350 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli ECRC101 0.64 MCAODC_01540 nhaR transcriptional activator NhaR 0.46 MCAODC_01320 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 0.44 1
Escherichia coli ECRC102 0.64 NIAGMN_08875 nhaR transcriptional activator NhaR 0.46 NIAGMN_08655 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 80
Pantoea sp. MT58 0.62 IAI47_16160 transcriptional activator NhaR 0.46 IAI47_16060 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 76
Pantoea agglomerans CFBP13505 P0401 0.61 PagCFBP13505_RS12835 transcriptional activator NhaR 0.45 PagCFBP13505_RS12935 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 74
Shewanella loihica PV-4 0.60 Shew_1044 nhaR transcriptional activator NhaR (RefSeq) 0.47 Shew_0783 pseudouridylate synthase (RefSeq) — —
Shewanella sp. ANA-3 0.59 Shewana3_3036 nhaR transcriptional activator NhaR (RefSeq) 0.46 Shewana3_0799 ribosomal large subunit pseudouridine synthase A (RefSeq) low > 73
Shewanella amazonensis SB2B 0.57 Sama_0870 nhaR transcriptional activator NhaR (RefSeq) 0.47 Sama_0606 pseudouridylate synthase (RefSeq) low > 62
Acidovorax sp. GW101-3H11 0.33 Ac3H11_815 Transcriptional regulator, LysR family 0.30 Ac3H11_174 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) 0.30 12
Dechlorosoma suillum PS 0.30 Dsui_1151 transcriptional regulator 0.40 Dsui_3205 pseudouridine synthase, RluA family low > 51
Alteromonas macleodii MIT1002 0.24 MIT1002_03553 Na(+)/H(+) antiporter regulatory protein 0.45 MIT1002_00658 Ribosomal large subunit pseudouridine synthase A low > 70

Not shown: 24 genomes with orthologs for CSW01_03550 only; 11 genomes with orthologs for CSW01_12700 only