Conservation of cofitness between CSW01_13680 and CSW01_11870 in Vibrio cholerae E7946 ATCC 55056

116 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13680 DNA helicase RecG 1.0 CSW01_11870 DNA repair protein RadA 0.77 7
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS18845 ATP-dependent DNA helicase RecG 0.80 PagCFBP13505_RS21755 DNA repair protein RadA low > 74
Pantoea sp. MT58 0.70 IAI47_00500 ATP-dependent DNA helicase RecG 0.80 IAI47_16345 DNA repair protein RadA low > 76
Serratia liquefaciens MT49 0.69 IAI46_24905 ATP-dependent DNA helicase RecG 0.79 IAI46_02945 DNA repair protein RadA low > 87
Klebsiella pneumoniae MKP103 0.69 KDGMDA_08135 ATP-dependent DNA helicase RecG 0.82 KDGMDA_12435 DNA repair protein RadA low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.82 GFF1057 DNA repair protein RadA low > 78
Erwinia amylovora T8 0.69 OLJFJH_05550 ATP-dependent DNA helicase RecG 0.81 OLJFJH_01590 DNA repair protein RadA low > 58
Escherichia coli ECRC99 0.69 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.82 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECRC102 0.69 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.82 NIAGMN_09045 radA DNA repair protein RadA low > 80
Dickeya dadantii 3937 0.69 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.76 DDA3937_RS02420 DNA repair protein RadA low > 74
Escherichia coli ECRC98 0.69 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.82 JDDGAC_14790 radA DNA repair protein RadA low > 87
Escherichia coli ECRC101 0.69 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.82 MCAODC_01710 radA DNA repair protein RadA low > 87
Escherichia coli ECRC100 0.69 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.82 OKFHMN_11195 radA DNA repair protein RadA low > 79
Escherichia coli ECOR38 0.68 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.83 HEPCGN_09195 radA DNA repair protein RadA low > 88
Escherichia coli ECOR27 0.68 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.82 NOLOHH_03520 radA DNA repair protein RadA low > 76
Escherichia fergusonii Becca 0.68 EFB2_00136 ATP-dependent DNA helicase RecG 0.83 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.83 OHPLBJKB_03672 DNA repair protein RadA low > 74
Escherichia coli ECRC62 0.68 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.82 BNILDI_08075 radA DNA repair protein RadA low > 75
Escherichia coli BW25113 0.68 b3652 recG ATP-dependent DNA helicase (NCBI) 0.83 b4389 radA predicted repair protein (NCBI) 0.29 69
Escherichia coli BL21 0.68 ECD_03509 ATP-dependent DNA helicase 0.83 ECD_04265 DNA repair protein 0.75 14
Escherichia coli Nissle 1917 0.68 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.83 ECOLIN_RS25190 DNA repair protein RadA low > 55
Enterobacter sp. TBS_079 0.68 MPMX20_00084 ATP-dependent DNA helicase RecG 0.81 MPMX20_00694 DNA repair protein RadA low > 85
Klebsiella michiganensis M5al 0.68 BWI76_RS27440 DNA helicase RecG 0.82 BWI76_RS04165 DNA repair protein RadA low > 92
Dickeya dianthicola 67-19 0.68 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.76 HGI48_RS02380 DNA repair protein RadA low > 71
Pectobacterium carotovorum WPP14 0.68 HER17_RS21395 ATP-dependent DNA helicase RecG 0.77 HER17_RS19085 DNA repair protein RadA low > 75
Dickeya dianthicola ME23 0.68 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.76 DZA65_RS02485 DNA repair protein RadA low > 75
Enterobacter asburiae PDN3 0.67 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.81 EX28DRAFT_3597 DNA repair protein RadA low > 76
Erwinia tracheiphila HP pepo 2.2 0.67 IJEDHG_08345 recG ATP-dependent DNA helicase RecG 0.80 IJEDHG_06365 radA DNA repair protein RadA low > 61
Erwinia tracheiphila SCR3 0.67 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.80 LU632_RS02550 radA DNA repair protein RadA low > 73
Rahnella sp. WP5 0.67 EX31_RS15820 ATP-dependent DNA helicase RecG 0.81 EX31_RS04030 DNA repair protein RadA low > 89
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.73 Sama_0981 DNA repair protein RadA (RefSeq) 0.38 48
Shewanella loihica PV-4 0.65 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.40 Shew_2807 DNA repair protein RadA (RefSeq) low > 60
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.74 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.43 50
Alteromonas macleodii MIT1002 0.64 MIT1002_00111 ATP-dependent DNA helicase RecG 0.74 MIT1002_02706 Lon protease 2 low > 70
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.74 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.53 14
Pseudomonas segetis P6 0.57 ACVTMO_RS00200 recG ATP-dependent DNA helicase RecG 0.62 ACVTMO_RS19740 radA DNA repair protein RadA low > 75
Pseudomonas stutzeri RCH2 0.57 Psest_4192 ATP-dependent DNA helicase RecG 0.62 Psest_3401 DNA repair protein RadA — —
Pseudomonas sp. BP01 0.56 JOY50_RS08945 recG ATP-dependent DNA helicase RecG 0.62 JOY50_RS15685 radA DNA repair protein RadA 0.35 27
Pseudomonas sp. S08-1 0.56 OH686_13505 ATP-dependent DNA helicase RecG 0.62 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas putida KT2440 0.56 PP_5310 junction-specific ATP-dependent DNA helicase 0.62 PP_4644 DNA repair enzyme low > 96
Pseudomonas aeruginosa PA14 0.55 IKLFDK_26730 ATP-dependent DNA helicase RecG 0.64 IKLFDK_00465 DNA repair protein RadA 0.46 71
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS49510 recG;go_function=nucleic ATP-dependent DNA helicase RecG 0.64 DQ20_RS55850 radA;go_function=ATP DNA repair protein RadA low > 101
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS12615 recG;go_function=nucleic ATP-dependent DNA helicase RecG 0.64 DY961_RS23385 radA;go_function=ATP DNA repair protein RadA 0.31 32
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.63 Pf1N1B4_2768 DNA repair protein RadA 0.27 80
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.63 PfGW456L13_1442 DNA repair protein RadA low > 87
Pseudomonas sp. RS175 0.55 PFR28_04435 ATP-dependent DNA helicase RecG 0.63 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.63 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.63 PS417_24305 DNA repair protein RadA low > 88
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.63 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas sp. DMC3 0.55 GFF427 ATP-dependent DNA helicase RecG 0.63 GFF3954 DNA repair protein RadA low > 89
Marinobacter adhaerens HP15 0.55 HP15_309 DNA helicase, ATP-dependent, RecG 0.68 HP15_487 DNA repair protein RadA 0.79 7
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_00042 ATP-dependent DNA helicase RecG 0.63 GEMAOFIL_05014 DNA repair protein RadA low > 96
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.63 Pf6N2E2_5076 DNA repair protein RadA 0.27 84
Pseudomonas orientalis W4I3 0.55 QF045_RS02225 ATP-dependent DNA helicase RecG 0.63 QF045_RS26600 DNA repair protein RadA low > 93
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_12380 ATP-dependent DNA helicase RecG 0.63 AO356_15680 DNA repair protein RadA 0.35 38
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.63 AO353_13980 DNA repair protein RadA 0.48 17
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_0201 ATP-dependent DNA helicase RecG 0.63 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_0201 ATP-dependent DNA helicase RecG 0.63 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas sp. SVBP6 0.55 COO64_RS01595 recG ATP-dependent DNA helicase RecG 0.62 COO64_RS02920 radA DNA repair protein RadA low > 93
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.57 ABIE51_RS07685 DNA repair protein RadA low > 62
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.57 MPMX26_02235 DNA repair protein RadA low > 36
Acinetobacter baumannii LAC-4 0.52 RR41_RS02075 ATP-dependent DNA helicase RecG 0.58 RR41_RS04415 DNA repair protein RadA — —
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS16735 ATP-dependent DNA helicase RecG 0.59 LRK53_RS07420 DNA repair protein RadA low > 59
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.58 LRK55_RS02280 DNA repair protein RadA low > 63
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.57 ABZR86_RS08845 DNA repair protein RadA 0.84 12
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.58 LRK54_RS02525 DNA repair protein RadA low > 59
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.59 OKGIIK_09580 radA DNA repair protein RadA low > 53
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.59 B158DRAFT_0877 DNA replication and repair protein RadA 0.59 28
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS17390 ATP-dependent DNA helicase RecG 0.54 RR42_RS12030 DNA repair protein RadA — —
Methylophilus sp. DMC18 0.45 GFF2125 ATP-dependent DNA helicase RecG 0.55 GFF1046 DNA repair protein RadA low > 43
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS05675 DNA helicase RecG 0.52 RALBFv3_RS00210 DNA repair protein RadA low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS07950 DNA helicase RecG 0.52 UW163_RS13540 DNA repair protein RadA — —
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.53 ABZR87_RS11670 DNA repair protein RadA low > 80
Ralstonia solanacearum PSI07 0.45 RPSI07_RS11625 DNA helicase RecG 0.52 RPSI07_RS17270 DNA repair protein RadA 0.42 46
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.52 RS_RS06880 DNA repair protein RadA — —
Paraburkholderia graminis OAS925 0.44 ABIE53_000833 ATP-dependent DNA helicase RecG 0.53 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.52 BPHYT_RS12235 DNA repair protein RadA low > 109
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.52 HSERO_RS10745 DNA repair protein RadA 0.56 15
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.52 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.54 QEN71_RS06320 DNA repair protein RadA — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.51 Ac3H11_3371 DNA repair protein RadA low > 79
Dechlorosoma suillum PS 0.42 Dsui_0311 ATP-dependent DNA helicase RecG 0.50 Dsui_2413 DNA repair protein RadA 0.60 24
Castellaniella sp019104865 MT123 0.41 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.51 ABCV34_RS02345 DNA repair protein RadA low > 48
Variovorax sp. OAS795 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.51 ABID97_RS03770 DNA repair protein RadA low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 GFF1833 DNA repair protein RadA low > 90
Variovorax sp. SCN45 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.51 GFF5087 DNA repair protein RadA low > 127
Sinorhizobium meliloti 1021 0.35 SMc00228 ATP-dependent DNA helicase RecG 0.41 SMc00556 DNA repair protein RadA 0.71 8
Synechococcus elongatus PCC 7942 0.35 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.41 Synpcc7942_1452 radA DNA repair protein RadA — —
Rhizobium sp. OAE497 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.41 ABIE40_RS06280 DNA repair protein RadA low > 107
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.41 MPMX19_00904 DNA repair protein RadA — —
Magnetospirillum magneticum AMB-1 0.34 AMB_RS12400 ATP-dependent DNA helicase RecG 0.41 AMB_RS10555 DNA repair protein RadA — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.41 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.40 ABI39_RS10420 DNA repair protein RadA low > 72
Azospirillum brasilense Sp245 0.33 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.42 AZOBR_RS08320 DNA repair protein RadA 0.56 2
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.41 HMPREF1078_RS08395 DNA repair protein RadA — —
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.40 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Sphingobium sp. HT1-2 0.33 GFF3604 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.41 GFF1895 DNA repair protein RadA low > 95
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.40 BT2406 putative DNA repair protein (NCBI ptt file) — —
Agrobacterium fabrum C58 0.33 Atu1780 ATP-dependent DNA helicase 0.40 Atu1077 DNA repair protein 0.56 11
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.40 CCNA_01732 DNA repair protein RadA low > 67
Caulobacter crescentus NA1000 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.40 CCNA_01732 DNA repair protein RadA low > 66
Phaeobacter inhibens DSM 17395 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG 0.41 PGA1_c10840 DNA repair protein RadA 0.35 25
Fusobacterium nucleatum SB010 0.32 HUW76_01465 ATP-dependent DNA helicase RecG 0.33 HUW76_02270 DNA repair protein RadA low > 35
Cellulophaga baltica 18 0.32 M666_RS15340 ATP-dependent DNA helicase RecG 0.39 M666_RS03595 DNA repair protein RadA low > 67
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.41 Dshi_2129 DNA repair protein RadA (RefSeq) 0.53 12
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.42 Echvi_1031 DNA repair protein RadA 0.70 16
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.38 Ga0059261_0751 DNA repair protein RadA 0.60 9
Bosea sp. OAE506 0.31 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.43 ABIE41_RS17800 DNA repair protein RadA 0.61 1
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15020 DNA helicase RecG 0.42 CA264_17125 DNA repair protein RadA 0.45 40
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS22835 ATP-dependent DNA helicase RecG 0.38 CA265_RS22660 DNA repair protein RadA 0.47 23
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS04765 ATP-dependent DNA helicase RecG 0.38 A4249_RS03745 DNA repair protein RadA low > 48
Rhodospirillum rubrum S1H 0.29 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.39 Rru_A0406 DNA repair protein RadA (NCBI) — —
Xanthobacter sp. DMC5 0.29 GFF630 ATP-dependent DNA helicase RecG 0.41 GFF1870 DNA repair protein RadA — —
Rhodopseudomonas palustris CGA009 0.29 TX73_013795 ATP-dependent DNA helicase RecG 0.41 TX73_015980 DNA repair protein RadA 0.44 5
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.40 ABZR88_RS20495 DNA repair protein RadA low > 71
Mycobacterium tuberculosis H37Rv 0.24 Rv2973c Probable ATP-dependent DNA helicase RecG 0.33 Rv3585 DNA repair protein RadA (DNA repair protein SMS) low > 58

Not shown: 0 genomes with orthologs for CSW01_13680 only; 5 genomes with orthologs for CSW01_11870 only