| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_10335 | | RNA polymerase sigma factor FliA | 1.0 | CSW01_11210 | | flagellar hook protein FlgE | 0.89 | 4 |
| Shewanella oneidensis MR-1 | 0.59 | SO3210 | fliA | RNA polymerase sigma-27 factor (NCBI ptt file) | 0.42 | SO3247 | flgE | flagellar hook protein FlgE (NCBI ptt file) | 0.74 | 23 |
| Alteromonas macleodii MIT1002 | 0.59 | MIT1002_01103 | | Sigma-F factor | 0.38 | MIT1002_01042 | | Flagellar hook protein FlgE | low | > 70 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_1359 | fliA | flagellar biosynthesis sigma factor (RefSeq) | 0.42 | Shewana3_1324 | flgE | flagellar hook protein FlgE (RefSeq) | 0.94 | 5 |
| Shewanella loihica PV-4 | 0.58 | Shew_1383 | fliA | flagellar biosynthesis sigma factor (RefSeq) | 0.41 | Shew_1348 | flgE | flagellar hook protein FlgE (RefSeq) | 0.92 | 37 |
| Shewanella amazonensis SB2B | 0.57 | Sama_2280 | fliA | flagellar biosynthesis sigma factor (RefSeq) | 0.42 | Sama_2315 | flgE | flagellar hook protein FlgE (RefSeq) | 0.98 | 14 |
| Pseudomonas sp. S08-1 | 0.54 | OH686_02730 | | RNA polymerase sigma factor for flagellar operon | 0.25 | OH686_02960 | | Flagellar hook protein FlgE | 0.92 | 4 |
| Pseudomonas aeruginosa MRSN321 | 0.54 | DY961_RS05635 | fliA;inference=COORDINATES | RNA polymerase sigma factor FliA | 0.23 | DY961_RS07050 | flgE;inference=COORDINATES | flagellar hook protein FlgE | 0.93 | 3 |
| Pseudomonas aeruginosa PUPa3 | 0.54 | DQ20_RS47155 | fliA;inference=COORDINATES | RNA polymerase sigma factor FliA | 0.23 | DQ20_RS45735 | flgE;inference=COORDINATES | flagellar hook protein FlgE | 0.97 | 1 |
| Pseudomonas aeruginosa PA14 | 0.54 | IKLFDK_06920 | | flagellar biosynthesis sigma factor FliA | 0.23 | IKLFDK_04960 | | flagellar hook protein FlgE | 0.87 | 5 |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_1740 | | RNA polymerase sigma factor, FliA/WhiG family | 0.21 | Psest_4150 | | fagellar hook-basal body proteins | low | > 67 |
| Pseudomonas segetis P6 | 0.52 | ACVTMO_RS15490 | fliA | RNA polymerase sigma factor FliA | 0.26 | ACVTMO_RS15675 | flgE | flagellar hook protein FlgE | 0.97 | 1 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | 0.27 | Psyr_3478 | | Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE | 0.72 | 6 |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | 0.27 | Psyr_3478 | | Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE | 0.89 | 4 |
| Pseudomonas putida KT2440 | 0.51 | PP_4341 | | RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons | 0.24 | PP_4388 | | Flagellar hook protein FlgE | 0.93 | 1 |
| Pseudomonas lactucae CFBP13502 | 0.51 | GEMAOFIL_04138 | | RNA polymerase sigma factor FliA | 0.23 | GEMAOFIL_04454 | | Flagellar hook protein FlgE | 0.92 | 2 |
| Pseudomonas orientalis W4I3 | 0.51 | QF045_RS21835 | | RNA polymerase sigma factor FliA | 0.22 | QF045_RS23640 | | flagellar hook protein FlgE | low | > 93 |
| Pseudomonas sp. RS175 | 0.51 | PFR28_00852 | | RNA polymerase sigma factor FliA | 0.24 | PFR28_03251 | | Flagellar hook protein FlgE | 0.95 | 4 |
| Pseudomonas sp. BP01 | 0.51 | JOY50_RS00585 | fliA | RNA polymerase sigma factor FliA | 0.24 | JOY50_RS00780 | flgE | flagellar hook protein FlgE | 0.82 | 3 |
| Pseudomonas fluorescens SBW25 | 0.51 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | 0.22 | PFLU_RS23165 | | flagellar hook protein FlgE | 0.96 | 9 |
| Pseudomonas fluorescens SBW25-INTG | 0.51 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | 0.22 | PFLU_RS23165 | | flagellar hook protein FlgE | 0.97 | 6 |
| Pseudomonas simiae WCS417 | 0.51 | PS417_19695 | | flagellar biosynthesis sigma factor | 0.22 | PS417_21555 | | flagellar hook protein FlgE | 0.97 | 2 |
| Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_3626 | | RNA polymerase sigma factor for flagellar operon | 0.25 | Pf1N1B4_3475 | | Flagellar hook protein FlgE | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_18785 | | flagellar biosynthesis sigma factor | 0.23 | AO353_02845 | | flagellar biosynthesis protein FlgE | 0.89 | 2 |
| Pseudomonas fluorescens FW300-N2E2 | 0.51 | Pf6N2E2_2573 | | RNA polymerase sigma factor for flagellar operon | 0.22 | Pf6N2E2_5697 | | Flagellar hook protein FlgE | 0.95 | 1 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_03730 | | flagellar biosynthesis sigma factor | 0.23 | AO356_18930 | | flagellar biosynthesis protein FlgE | 0.95 | 5 |
| Pseudomonas sp. DMC3 | 0.51 | GFF2472 | | RNA polymerase sigma factor FliA | 0.23 | GFF4847 | | Flagellar hook protein FlgE | 0.88 | 2 |
| Pseudomonas sp. SVBP6 | 0.51 | COO64_RS25625 | fliA | RNA polymerase sigma factor FliA | 0.24 | COO64_RS21385 | flgE | flagellar hook protein FlgE | 0.98 | 1 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_4331 | | RNA polymerase sigma factor for flagellar operon | 0.23 | PfGW456L13_2004 | | Flagellar hook protein FlgE | 0.36 | 1 |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_02830 | fliA | RNA polymerase sigma factor FliA | 0.24 | OKGIIK_02665 | flgE | flagellar hook protein FlgE | 0.75 | 6 |
| Rhodanobacter denitrificans FW104-10B01 | 0.47 | LRK54_RS13580 | | RNA polymerase sigma factor FliA | 0.24 | LRK54_RS13420 | | flagellar hook protein FlgE | 0.72 | 5 |
| Rhodanobacter sp000427505 FW510-R12 | 0.47 | LRK53_RS14995 | | RNA polymerase sigma factor FliA | 0.25 | LRK53_RS15160 | | flagellar hook protein FlgE | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS13320 | | RNA polymerase sigma factor FliA | 0.25 | LRK55_RS13160 | | flagellar hook protein FlgE | 0.90 | 4 |
| Dyella japonica UNC79MFTsu3.2 | 0.47 | ABZR86_RS20265 | | RNA polymerase sigma factor FliA | 0.24 | ABZR86_RS20090 | | flagellar hook protein FlgE | low | > 74 |
| Lysobacter sp. OAE881 | 0.44 | ABIE51_RS16865 | | RNA polymerase sigma factor FliA | 0.26 | ABIE51_RS16685 | | flagellar hook protein FlgE | 0.95 | 2 |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS10160 | | flagellar biosynthesis sigma factor | 0.24 | HSERO_RS17660 | | flagellar hook protein FlgE | low | > 78 |
| Dechlorosoma suillum PS | 0.42 | Dsui_1726 | | RNA polymerase sigma factor, FliA/WhiG family | 0.23 | Dsui_1735 | | flagellar hook-basal body proteins | low | > 51 |
| Methylophilus sp. DMC18 | 0.42 | GFF1338 | | RNA polymerase sigma factor FliA | 0.24 | GFF560 | | Flagellar hook protein FlgE | low | > 43 |
| Paraburkholderia sabiae LMG 24235 | 0.42 | QEN71_RS28940 | | RNA polymerase sigma factor FliA | 0.23 | QEN71_RS39330 | | flagellar hook protein FlgE | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.41 | BPHYT_RS18925 | | RNA polymerase sigma70 | 0.23 | BPHYT_RS11995 | | flagellar hook protein FlgE | low | > 109 |
| Rahnella sp. WP5 | 0.41 | EX31_RS09450 | | RNA polymerase sigma factor FliA | 0.20 | EX31_RS11300 | | flagellar hook protein FlgE | 0.86 | 1 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS13300 | | RNA polymerase sigma factor FliA | 0.19 | DDA3937_RS13465 | | flagellar hook protein FlgE | 0.97 | 10 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF1428 | | RNA polymerase sigma factor for flagellar operon | 0.21 | GFF1412 | | Flagellar hook protein FlgE | low | > 90 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_15785 | | RNA polymerase sigma factor FliA | 0.20 | IAI46_15945 | | flagellar hook protein FlgE | low | > 87 |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS13350 | | RNA polymerase sigma factor FliA | 0.18 | HGI48_RS13510 | | flagellar hook protein FlgE | 0.82 | 18 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS13835 | | RNA polymerase sigma factor FliA | 0.19 | DZA65_RS13995 | | flagellar hook protein FlgE | 0.99 | 5 |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_02847 | | RNA polymerase sigma factor FliA | 0.23 | MPMX20_01755 | | Flagellar hook protein FlgE | 0.90 | 4 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.40 | GFF1690 | | RNA polymerase sigma factor for flagellar operon | 0.22 | GFF3357 | | Flagellar hook protein FlgE | 0.83 | 7 |
| Enterobacter asburiae PDN3 | 0.40 | EX28DRAFT_0625 | | RNA polymerase sigma factor, FliA/WhiG family | 0.22 | EX28DRAFT_1856 | | flagellar hook-basal body protein | 0.86 | 1 |
| Erwinia tracheiphila HP pepo 2.2 | 0.40 | IJEDHG_21960 | fliA | RNA polymerase sigma factor FliA | 0.19 | IJEDHG_21060 | flgE | flagellar hook protein FlgE | low | > 61 |
| Pectobacterium carotovorum WPP14 | 0.40 | HER17_RS08355 | | RNA polymerase sigma factor FliA | 0.19 | HER17_RS08180 | | flagellar hook protein FlgE | 0.96 | 2 |
| Escherichia fergusonii Becca | 0.40 | EFB2_02023 | | RNA polymerase sigma factor FliA | 0.22 | EFB2_02898 | | Flagellar hook protein FlgE | low | > 86 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_00370 | fliA | RNA polymerase sigma factor FliA | 0.22 | JDDGAC_07320 | flgE | flagellar hook protein FlgE | 0.48 | 39 |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS23830 | | RNA polymerase sigma factor FliA | 0.26 | RS_RS18810 | | flagellar hook protein FlgE | low | > 80 |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_02310 | fliA | RNA polymerase sigma factor FliA | 0.22 | KEDOAH_24095 | flgE | flagellar hook protein FlgE | — | — |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS18040 | | RNA polymerase sigma factor FliA | 0.25 | ABZR87_RS22275 | | flagellar hook protein FlgE | 0.96 | 1 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_15190 | fliA | RNA polymerase sigma factor FliA | 0.22 | BNILDI_19350 | flgE | flagellar hook protein FlgE | low | > 75 |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_16400 | fliA | RNA polymerase sigma factor FliA | 0.22 | NOLOHH_21190 | flgE | flagellar hook protein FlgE | 0.94 | 10 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_02270 | fliA | RNA polymerase sigma factor FliA | 0.22 | NIAGMN_24170 | flgE | flagellar hook protein FlgE | low | > 80 |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_04135 | fliA | RNA polymerase sigma factor FliA | 0.22 | HEPCGN_23830 | flgE | flagellar hook protein FlgE | low | > 88 |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_25780 | fliA | RNA polymerase sigma factor FliA | 0.22 | OKFHMN_03660 | flgE | flagellar hook protein FlgE | 0.79 | 15 |
| Escherichia coli ECRC101 | 0.40 | MCAODC_19610 | fliA | RNA polymerase sigma factor FliA | 0.22 | MCAODC_23020 | flgE | flagellar hook protein FlgE | 0.33 | 3 |
| Erwinia tracheiphila SCR3 | 0.40 | LU632_RS13785 | | RNA polymerase sigma factor FliA | 0.19 | LU632_RS10410 | flgE | flagellar hook protein FlgE | low | > 73 |
| Escherichia coli BW25113 | 0.39 | b1922 | fliA | flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) | 0.22 | b1076 | flgE | flagellar hook protein E (NCBI) | 0.50 | 1 |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS17485 | | RNA polymerase sigma factor FliA | 0.26 | RALBFv3_RS21725 | | flagellar hook protein FlgE | low | > 76 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS21665 | | RNA polymerase sigma factor FliA | 0.26 | UW163_RS17460 | | flagellar hook protein FlgE | — | — |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_1381 | | RNA polymerase sigma factor for flagellar operon | 0.26 | Ac3H11_1374 | | Flagellar hook protein FlgE | low | > 79 |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS10975 | | RNA polymerase sigma factor FliA | 0.22 | ECOLIN_RS06230 | | flagellar hook protein FlgE | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_01807 | | RNA polymerase sigma factor FliA | 0.22 | OHPLBJKB_02589 | | Flagellar hook protein FlgE | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.39 | RR42_RS35750 | | DNA-directed RNA polymerase sigma-70 factor | 0.17 | RR42_RS35710 | | flagellar hook protein FlgE | low | > 128 |
| Pantoea agglomerans CFBP13505 P0401 | 0.39 | PagCFBP13505_RS02055 | | RNA polymerase sigma factor FliA | 0.20 | PagCFBP13505_RS05185 | | flagellar hook protein FlgE | 0.91 | 3 |
| Pantoea sp. MT58 | 0.39 | IAI47_08160 | | RNA polymerase sigma factor FliA | 0.21 | IAI47_12150 | | flagellar hook protein FlgE | 0.87 | 4 |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS06165 | | RNA polymerase sigma factor FliA | 0.25 | RPSI07_RS01405 | | flagellar hook protein FlgE | low | > 81 |
| Variovorax sp. SCN45 | 0.39 | GFF5774 | | RNA polymerase sigma factor for flagellar operon | 0.23 | GFF5718 | | Flagellar hook protein FlgE | low | > 127 |
| Erwinia amylovora T8 | 0.39 | OLJFJH_12555 | | RNA polymerase sigma factor FliA | 0.20 | OLJFJH_15610 | | flagellar hook protein FlgE | low | > 58 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.38 | Xcc-8004.2832.1 | | RNA polymerase sigma factor for flagellar operon | 0.26 | Xcc-8004.2781.1 | | Flagellar hook protein FlgE | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS05605 | | RNA polymerase sigma factor FliA | 0.22 | ABCV34_RS05755 | | flagellar hook protein FlgE | 0.59 | 1 |
| Desulfovibrio vulgaris Miyazaki F | 0.29 | DvMF_2011 | | RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) | 0.17 | DvMF_1618 | | protein of unknown function DUF1078 domain protein (RefSeq) | low | > 51 |
| Sphingomonas koreensis DSMZ 15582 | 0.29 | Ga0059261_2081 | | RNA polymerase sigma factor, FliA/WhiG family | 0.27 | Ga0059261_2092 | | flagellar hook-basal body protein | 0.88 | 2 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU3229 | fliA | RNA polymerase sigma factor for flagellar operon FliA (TIGR) | 0.13 | DVU0307 | | flagella basal body rod domain protein (TIGR) | 0.90 | 8 |
Not shown: 5 genomes with orthologs for CSW01_10335 only; 12 genomes with orthologs for CSW01_11210 only