| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00785 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 1.0 | CSW01_09945 | | NADPH-dependent 2,4-dienoyl-CoA reductase | 0.41 | 18 |
| Pantoea agglomerans CFBP13505 P0401 | 0.68 | PagCFBP13505_RS18390 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.54 | PagCFBP13505_RS11565 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 74 |
| Pantoea sp. MT58 | 0.68 | IAI47_00950 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.55 | IAI47_02955 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 76 |
| Shewanella loihica PV-4 | 0.67 | Shew_0138 | | tRNA (uracil-5-)-methyltransferase (RefSeq) | 0.61 | Shew_1942 | | NADH:flavin oxidoreductase/NADH oxidase (RefSeq) | low | > 60 |
| Pectobacterium carotovorum WPP14 | 0.67 | HER17_RS00975 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | HER17_RS18675 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 75 |
| Shewanella amazonensis SB2B | 0.67 | Sama_0193 | | tRNA (uracil-5-)-methyltransferase (RefSeq) | 0.63 | Sama_1724 | | NADH:flavin oxidoreductase/NADH oxidase (RefSeq) | low | > 62 |
| Serratia liquefaciens MT49 | 0.65 | IAI46_24455 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.54 | IAI46_22180 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 87 |
| Erwinia amylovora T8 | 0.65 | OLJFJH_06160 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.55 | OLJFJH_02165 | | NADPH-dependent 2 4-dienoyl-CoA reductase | low | > 58 |
| Enterobacter sp. TBS_079 | 0.65 | MPMX20_04515 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | 0.56 | MPMX20_03994 | | 2,4-dienoyl-CoA reductase | low | > 85 |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS22900 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | ECOLIN_RS17775 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 55 |
| Escherichia fergusonii Becca | 0.65 | EFB2_04645 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | 0.56 | EFB2_00730 | | 2,4-dienoyl-CoA reductase | low | > 86 |
| Escherichia coli ECRC102 | 0.65 | NIAGMN_11285 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | NIAGMN_16340 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 80 |
| Escherichia coli ECRC99 | 0.65 | KEDOAH_14625 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | KEDOAH_09570 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | — | — |
| Klebsiella michiganensis M5al | 0.65 | BWI76_RS00885 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.55 | BWI76_RS24675 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 92 |
| Escherichia coli ECRC100 | 0.65 | OKFHMN_13535 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | OKFHMN_18575 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 79 |
| Escherichia coli ECRC98 | 0.65 | JDDGAC_17160 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | JDDGAC_22210 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 87 |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_0179 | | tRNA (uracil-5-)-methyltransferase (RefSeq) | 0.60 | Shewana3_1965 | | 2,4-dienoyl-CoA reductase (RefSeq) | low | > 73 |
| Escherichia coli BW25113 | 0.65 | b3965 | trmA | tRNA (uracil-5-)-methyltransferase (NCBI) | 0.56 | b3081 | fadH | 2,4-dienoyl-CoA reductase, NADH and FMN-linked (NCBI) | low | > 76 |
| Rahnella sp. WP5 | 0.65 | EX31_RS14140 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.55 | EX31_RS08345 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 89 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.65 | OHPLBJKB_04085 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | 0.56 | OHPLBJKB_00621 | | 2,4-dienoyl-CoA reductase | low | > 74 |
| Klebsiella pneumoniae MKP103 | 0.65 | KDGMDA_09400 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.55 | KDGMDA_05545 | | NADPH-dependent 2 4-dienoyl-CoA reductase | low | > 95 |
| Escherichia coli ECRC62 | 0.65 | BNILDI_05845 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | BNILDI_01145 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 75 |
| Escherichia coli BL21 | 0.65 | ECD_03850 | | tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase | 0.56 | ECD_02950 | | 2,4-dienoyl-CoA reductase, NADH and FMN-linked | low | > 61 |
| Escherichia coli ECOR27 | 0.65 | NOLOHH_05680 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | NOLOHH_10370 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 76 |
| Escherichia coli ECOR38 | 0.65 | HEPCGN_12190 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | HEPCGN_17420 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 88 |
| Shewanella oneidensis MR-1 | 0.65 | SO0206 | trmA | tRNA (uracil-5-)-methyltransferase (NCBI ptt file) | 0.61 | SO2419 | | 2,4-dienoyl-CoA reductase, putative (NCBI ptt file) | low | > 76 |
| Escherichia coli ECRC101 | 0.65 | MCAODC_04035 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.56 | MCAODC_09090 | fadH | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF2351 | | tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) | 0.55 | GFF3185 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_4428 | | tRNA (uracil(54)-C(5))-methyltransferase | 0.56 | EX28DRAFT_3152 | | NADH:flavin oxidoreductases, Old Yellow Enzyme family | low | > 76 |
| Alteromonas macleodii MIT1002 | 0.61 | MIT1002_03370 | | tRNA (uracil(54)-C(5))-methyltransferase | 0.61 | MIT1002_03065 | | 2,4-dienoyl-CoA reductase [NADPH] | low | > 70 |
| Acinetobacter baumannii LAC-4 | 0.58 | RR41_RS11900 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.60 | RR41_RS13870 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.57 | MPMX26_01714 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | 0.58 | MPMX26_01687 | | 2,4-dienoyl-CoA reductase | low | > 36 |
| Pseudomonas segetis P6 | 0.51 | ACVTMO_RS19815 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.53 | ACVTMO_RS15125 | | oxidoreductase | low | > 75 |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_13905 | | tRNA (uracil-5-)-methyltransferase | 0.55 | AO353_20220 | | 2,4-dienoyl-CoA reductase | low | > 101 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS26305 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.53 | PFLU_RS19095 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS26305 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.53 | PFLU_RS19095 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.50 | Psest_3451 | | tRNA (uracil-5-)-methyltransferase | 0.53 | Psest_2554 | | NADH:flavin oxidoreductases, Old Yellow Enzyme family | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_5063 | | tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) | 0.54 | Pf6N2E2_2209 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | low | > 103 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_24385 | | tRNA (uracil-5-)-methyltransferase | 0.53 | PS417_17165 | | 2,4-dienoyl-CoA reductase | low | > 88 |
| Pseudomonas orientalis W4I3 | 0.49 | QF045_RS26680 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.53 | QF045_RS18825 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 93 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_03809 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | 0.55 | PFR28_01236 | | 2,4-dienoyl-CoA reductase | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.49 | AO356_15600 | | tRNA (uracil-5-)-methyltransferase | 0.54 | AO356_01700 | | 2,4-dienoyl-CoA reductase | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.49 | PfGW456L13_1430 | | tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) | 0.55 | PfGW456L13_2567 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.49 | COO64_RS02860 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.53 | COO64_RS05540 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.49 | GEMAOFIL_05030 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | 0.53 | GEMAOFIL_03732 | | 2,4-dienoyl-CoA reductase | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_2754 | | tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) | 0.55 | Pf1N1B4_3955 | | 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | low | > 87 |
| Pseudomonas sp. DMC3 | 0.48 | GFF3938 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | 0.55 | GFF1451 | | 2,4-dienoyl-CoA reductase | low | > 89 |
| Pseudomonas putida KT2440 | 0.48 | PP_4654 | | tRNA/tmRNA (uracil-C(5))-methyltransferase | 0.53 | PP_2008 | | 2,4-dienoyl-CoA reductase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_16060 | | tRNA (uracil(54)-C(5))-methyltransferase | 0.55 | OH686_04325 | | 2,4-dienoyl-CoA reductase [NADPH] | low | > 80 |
| Pseudomonas sp. BP01 | 0.48 | JOY50_RS27500 | trmA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.53 | JOY50_RS16515 | | NADPH-dependent 2,4-dienoyl-CoA reductase | low | > 84 |
| Pseudomonas aeruginosa PUPa3 | 0.47 | DQ20_RS52695 | trmA;go_function=tRNA | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.54 | DQ20_RS34075 | | NADPH-dependent 2 4-dienoyl-CoA reductase | 0.22 | 22 |
| Pseudomonas aeruginosa MRSN321 | 0.47 | DY961_RS09335 | trmA;go_function=S-adenosylmethionine-dependent | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.54 | DY961_RS09840 | | NADPH-dependent 2 4-dienoyl-CoA reductase | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.47 | IKLFDK_30015 | | tRNA (uridine(54)-C5)-methyltransferase TrmA | 0.54 | IKLFDK_29505 | | NADPH-dependent 2 4-dienoyl-CoA reductase | low | > 98 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_4287 | | tRNA (uracil-5-)-methyltransferase | 0.53 | Psyr_1675 | | 2,4-dienoyl-CoA reductase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_4287 | | tRNA (uracil-5-)-methyltransferase | 0.53 | Psyr_1675 | | 2,4-dienoyl-CoA reductase | low | > 86 |
Not shown: 6 genomes with orthologs for CSW01_00785 only; 23 genomes with orthologs for CSW01_09945 only