Conservation of cofitness between CSW01_11315 and CSW01_09870 in Vibrio cholerae E7946 ATCC 55056

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_11315 TraB/GumN family protein 1.0 CSW01_09870 pyridoxal phosphate-dependent aminotransferase 0.57 1
Serratia liquefaciens MT49 0.21 IAI46_05305 TraB/GumN family protein 0.79 IAI46_17720 pyridoxal phosphate-dependent aminotransferase low > 87
Escherichia coli BL21 0.19 ECD_00433 TraB family protein 0.81 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 61
Escherichia coli ECRC98 0.19 JDDGAC_11740 ybaP Uncharacterized protein YbaP 0.81 JDDGAC_26790 alaA alanine transaminase AlaA low > 87
Escherichia coli ECRC101 0.19 MCAODC_27315 ybaP Uncharacterized protein YbaP 0.81 MCAODC_13865 alaA alanine transaminase AlaA low > 87
Escherichia coli Nissle 1917 0.19 ECOLIN_RS02855 TraB/GumN family protein 0.81 ECOLIN_RS13295 alanine transaminase AlaA — —
Escherichia coli ECRC99 0.19 KEDOAH_19875 ybaP Uncharacterized protein YbaP 0.81 KEDOAH_05370 alaA alanine transaminase AlaA — —
Escherichia coli ECRC100 0.19 OKFHMN_08095 ybaP Uncharacterized protein YbaP 0.81 OKFHMN_22825 alaA alanine transaminase AlaA low > 79
Escherichia coli ECRC102 0.19 NIAGMN_06145 ybaP Uncharacterized protein YbaP 0.81 NIAGMN_20595 alaA alanine transaminase AlaA 0.62 5
Escherichia coli ECOR38 0.19 HEPCGN_06715 ybaP Uncharacterized protein YbaP 0.81 HEPCGN_22030 alaA alanine transaminase AlaA low > 88
Escherichia coli BW25113 0.19 b0482 ybaP hypothetical protein (NCBI) 0.81 b2290 yfbQ aspartate aminotransferase (NCBI) low > 76
Escherichia fergusonii Becca 0.19 EFB2_03576 hypothetical protein 0.81 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_03192 hypothetical protein 0.81 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA low > 74
Escherichia coli ECOR27 0.19 NOLOHH_01025 ybaP Uncharacterized protein YbaP 0.81 NOLOHH_14445 alaA alanine transaminase AlaA low > 76
Escherichia coli ECRC62 0.19 BNILDI_22445 ybaP Uncharacterized protein YbaP 0.81 BNILDI_13365 alaA alanine transaminase AlaA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF4402 FIG00921183: possible ligase 0.81 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) low > 78
Pectobacterium carotovorum WPP14 0.18 HER17_RS15630 TraB/GumN family protein 0.78 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase low > 75
Enterobacter asburiae PDN3 0.18 EX28DRAFT_2475 Uncharacterized protein conserved in bacteria 0.81 EX28DRAFT_0319 Aspartate/tyrosine/aromatic aminotransferase low > 76
Shewanella amazonensis SB2B 0.18 Sama_3151 hypothetical protein (RefSeq) 0.72 Sama_1697 aminotransferase AlaT (RefSeq) low > 62
Enterobacter sp. TBS_079 0.18 MPMX20_01083 hypothetical protein 0.81 MPMX20_03220 Glutamate-pyruvate aminotransferase AlaA low > 85
Pantoea agglomerans CFBP13505 P0401 0.18 PagCFBP13505_RS10795 hypothetical protein 0.80 PagCFBP13505_RS00325 pyridoxal phosphate-dependent aminotransferase low > 74
Klebsiella pneumoniae MKP103 0.18 KDGMDA_14940 conjugal transfer protein TraB 0.81 KDGMDA_27080 alanine transaminase AlaA low > 95
Rahnella sp. WP5 0.17 EX31_RS22570 conjugal transfer protein TraB 0.77 EX31_RS19445 pyridoxal phosphate-dependent aminotransferase low > 89
Klebsiella michiganensis M5al 0.17 BWI76_RS06875 conjugal transfer protein TraB 0.81 BWI76_RS20205 aminotransferase AlaT low > 92
Erwinia tracheiphila HP pepo 2.2 0.17 IJEDHG_01115 conjugal transfer protein TraB 0.80 IJEDHG_18035 aspB aminotransferase low > 61
Erwinia amylovora T8 0.17 OLJFJH_17710 conjugal transfer protein TraB 0.80 OLJFJH_11400 Glutamate-pyruvate aminotransferase AlaA low > 58
Erwinia tracheiphila SCR3 0.17 LU632_RS15305 TraB/GumN family protein 0.80 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase low > 73
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS15140 TraB/GumN family protein 0.19 A4249_RS04680 pyridoxal phosphate-dependent aminotransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.15 Xcc-8004.2258.1 FIG01210620: hypothetical protein 0.39 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) low > 74
Pantoea sp. MT58 0.14 IAI47_14405 TraB/GumN family protein 0.80 IAI47_06350 pyridoxal phosphate-dependent aminotransferase low > 76
Sphingomonas koreensis DSMZ 15582 0.14 Ga0059261_3233 Uncharacterized protein conserved in bacteria 0.16 Ga0059261_2226 Aspartate/tyrosine/aromatic aminotransferase low > 68
Alteromonas macleodii MIT1002 0.14 MIT1002_03727 TraB family protein 0.67 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA low > 70
Caulobacter crescentus NA1000 0.13 CCNA_02312 TraB superfamily protein 0.18 CCNA_01603 aspartate aminotransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_02312 TraB superfamily protein 0.18 CCNA_01603 aspartate aminotransferase low > 67
Rhodanobacter sp. FW510-T8 0.13 OKGIIK_03225 Polysaccharide biosynthesis protein GumN 0.38 OKGIIK_12720 aspB aminotransferase low > 53
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS21395 TraB/GumN family protein 0.38 ABZR86_RS12435 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 74
Rhodanobacter denitrificans FW104-10B01 0.12 LRK54_RS14385 TraB/GumN family protein 0.38 LRK54_RS11155 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 59
Rhodanobacter denitrificans MT42 0.12 LRK55_RS14105 TraB/GumN family protein 0.38 LRK55_RS10860 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 63
Shewanella loihica PV-4 0.12 Shew_0438 GumN family protein (RefSeq) 0.73 Shew_1914 aminotransferase AlaT (RefSeq) low > 60
Rhodanobacter sp000427505 FW510-R12 0.11 LRK53_RS14195 TraB/GumN family protein 0.39 LRK53_RS04055 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 59
Herbaspirillum seropedicae SmR1 0.11 HSERO_RS21490 hypothetical protein 0.67 HSERO_RS10455 aminotransferase low > 78
Shewanella sp. ANA-3 0.11 Shewana3_0556 GumN family protein (RefSeq) 0.72 Shewana3_2145 aminotransferase AlaT (RefSeq) low > 73
Sphingobium sp. HT1-2 0.10 GFF57 hypothetical protein 0.15 GFF403 Aspartate aminotransferase (EC 2.6.1.1) low > 95
Shewanella oneidensis MR-1 0.10 SO0557 conserved hypothetical protein (NCBI ptt file) 0.72 SO2483 aspartate aminotransferase, putative (NCBI ptt file) low > 76
Rhizobium sp. OAE497 0.09 ABIE40_RS17955 TraB/GumN family protein 0.19 ABIE40_RS12925 pyridoxal phosphate-dependent aminotransferase low > 107

Not shown: 0 genomes with orthologs for CSW01_11315 only; 77 genomes with orthologs for CSW01_09870 only