Conservation of cofitness between CSW01_06870 and CSW01_08440 in Vibrio cholerae E7946 ATCC 55056

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE 1.0 CSW01_08440 phage shock protein operon transcriptional activator 0.40 13
Dickeya dadantii 3937 0.60 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE 0.62 DDA3937_RS12430 phage shock protein operon transcriptional activator low > 74
Shewanella oneidensis MR-1 0.60 SO2501 radical activating enzyme (NCBI ptt file) 0.59 SO1806 pspF psp operon transcriptional activator (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.59 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE 0.59 HER17_RS09515 phage shock protein operon transcriptional activator low > 75
Shewanella sp. ANA-3 0.59 Shewana3_2163 radical activating enzyme (RefSeq) 0.58 Shewana3_2649 Fis family transcriptional regulator (RefSeq) low > 73
Rahnella sp. WP5 0.58 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE 0.59 EX31_RS15690 phage shock protein operon transcriptional activator low > 89
Serratia liquefaciens MT49 0.58 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE 0.60 IAI46_13505 phage shock protein operon transcriptional activator low > 87
Erwinia amylovora T8 0.57 OLJFJH_09270 7-carboxy-7-deazaguanine synthase QueE 0.59 OLJFJH_13670 phage shock protein operon transcriptional activator low > 58
Escherichia coli ECOR27 0.57 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 NOLOHH_20100 pspF phage shock protein operon transcriptional activator low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF4831 Queuosine Biosynthesis QueE Radical SAM 0.61 GFF2687 Psp operon transcriptional activator low > 78
Erwinia tracheiphila SCR3 0.57 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 LU632_RS11565 pspF phage shock protein operon transcriptional activator low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase 0.61 OHPLBJKB_02379 Psp operon transcriptional activator low > 74
Escherichia coli ECRC101 0.57 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 MCAODC_15855 pspF phage shock protein operon transcriptional activator low > 87
Escherichia coli ECRC100 0.57 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 OKFHMN_02415 pspF phage shock protein operon transcriptional activator low > 79
Erwinia tracheiphila HP pepo 2.2 0.57 IJEDHG_17410 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 IJEDHG_23015 pspF phage shock protein operon transcriptional activator low > 61
Escherichia coli ECRC62 0.57 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 BNILDI_18250 pspF phage shock protein operon transcriptional activator low > 75
Escherichia coli Nissle 1917 0.57 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE 0.61 ECOLIN_RS07845 phage shock protein operon transcriptional activator — —
Escherichia coli ECOR38 0.57 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 HEPCGN_25785 pspF phage shock protein operon transcriptional activator low > 88
Escherichia coli BL21 0.57 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis 0.61 ECD_01280 psp operon transcriptional activator — —
Escherichia coli BW25113 0.57 b2777 ygcF hypothetical protein (NCBI) 0.61 b1303 pspF psp operon transcriptional activator (VIMSS) low > 76
Escherichia coli ECRC98 0.57 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 JDDGAC_04960 pspF phage shock protein operon transcriptional activator low > 87
Escherichia coli ECRC102 0.57 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 NIAGMN_26585 pspF phage shock protein operon transcriptional activator — —
Escherichia coli ECRC99 0.57 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE 0.61 KEDOAH_26360 pspF phage shock protein operon transcriptional activator — —
Escherichia fergusonii Becca 0.57 EFB2_01141 7-carboxy-7-deazaguanine synthase 0.61 EFB2_02624 Psp operon transcriptional activator low > 86
Shewanella loihica PV-4 0.56 Shew_2061 radical SAM domain-containing protein (RefSeq) 0.58 Shew_2497 sigma-54 dependent trancsriptional regulator (RefSeq) low > 60
Dickeya dianthicola ME23 0.56 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE 0.62 DZA65_RS12950 phage shock protein operon transcriptional activator low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE 0.61 HGI48_RS12500 phage shock protein operon transcriptional activator low > 71
Enterobacter sp. TBS_079 0.56 MPMX20_03645 7-carboxy-7-deazaguanine synthase 0.59 MPMX20_02473 Psp operon transcriptional activator low > 85
Klebsiella michiganensis M5al 0.56 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE 0.61 BWI76_RS12445 phage shock protein operon transcriptional activator low > 92
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 0.59 EX28DRAFT_0975 psp operon transcriptional activator PspF low > 76
Pantoea sp. MT58 0.56 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE 0.59 IAI47_09390 phage shock protein operon transcriptional activator low > 76
Klebsiella pneumoniae MKP103 0.56 KDGMDA_03310 7-carboxy-7-deazaguanine synthase QueE 0.60 KDGMDA_19915 phage shock protein operon transcriptional activator low > 95
Pantoea agglomerans CFBP13505 P0401 0.55 PagCFBP13505_RS16825 7-carboxy-7-deazaguanine synthase QueE 0.60 PagCFBP13505_RS06760 phage shock protein operon transcriptional activator low > 74
Shewanella amazonensis SB2B 0.55 Sama_1825 radical activating enzyme (RefSeq) 0.56 Sama_1236 psp operon transcriptional activator (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.51 MIT1002_01264 7-carboxy-7-deazaguanine synthase 0.50 MIT1002_01142 Phage shock protein F low > 70
Desulfovibrio vulgaris Hildenborough JW710 0.15 DVU2658 conserved hypothetical protein (TIGR) 0.44 DVU2989 pspF psp operon transcriptional activator (TIGR) low > 55
Azospirillum brasilense Sp245 0.15 AZOBR_RS04155 radical SAM protein 0.50 AZOBR_RS02540 ATPase AAA low > 97
Sphingobium sp. HT1-2 0.14 GFF3750 7-carboxy-7-deazaguanine synthase (EC 4.3.99.3) 0.45 GFF989 Psp operon transcriptional activator low > 95
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_3210 Organic radical activating enzymes 0.46 Ga0059261_4149 psp operon transcriptional activator PspF low > 68

Not shown: 60 genomes with orthologs for CSW01_06870 only; 2 genomes with orthologs for CSW01_08440 only