Conservation of cofitness between CSW01_12720 and CSW01_07545 in Vibrio cholerae E7946 ATCC 55056

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12720 ornithine carbamoyltransferase 1.0 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 1
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3450 ornithine carbamoyltransferase 0.53 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF934 Ornithine carbamoyltransferase (EC 2.1.3.3) 0.54 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) low > 78
Enterobacter sp. TBS_079 0.80 MPMX20_00547 Ornithine carbamoyltransferase 0.52 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F low > 85
Escherichia fergusonii Becca 0.79 EFB2_04285 Ornithine carbamoyltransferase 0.54 EFB2_02166 Ribosomal RNA small subunit methyltransferase F low > 86
Escherichia coli ECOR38 0.79 HEPCGN_10045 argF ornithine carbamoyltransferase 0.54 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 88
Escherichia coli Nissle 1917 0.79 ECOLIN_RS24645 ornithine carbamoyltransferase 0.54 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Dickeya dianthicola ME23 0.79 DZA65_RS02035 ornithine carbamoyltransferase 0.51 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Pantoea sp. MT58 0.78 IAI47_16845 ornithine carbamoyltransferase 0.53 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 76
Rahnella sp. WP5 0.75 EX31_RS12800 ornithine carbamoyltransferase 0.50 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 89
Serratia liquefaciens MT49 0.73 IAI46_02320 ornithine carbamoyltransferase 0.52 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 87
Pectobacterium carotovorum WPP14 0.73 HER17_RS19500 ornithine carbamoyltransferase 0.51 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS08950 ornithine carbamoyltransferase 0.53 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.73 49
Dickeya dadantii 3937 0.70 DDA3937_RS01940 ornithine carbamoyltransferase 0.51 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS01915 ornithine carbamoyltransferase 0.51 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 71
Klebsiella pneumoniae MKP103 0.70 KDGMDA_11500 ornithine carbamoyltransferase 0.50 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 95
Escherichia coli ECRC62 0.70 BNILDI_07425 argF ornithine carbamoyltransferase 0.54 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Escherichia coli ECRC98 0.70 JDDGAC_15475 argF ornithine carbamoyltransferase 0.54 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 87
Escherichia coli ECRC99 0.70 KEDOAH_16320 argF ornithine carbamoyltransferase 0.54 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli BL21 0.70 ECD_04120 ornithine carbamoyltransferase 1 0.54 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent — —
Escherichia coli ECRC102 0.70 NIAGMN_09685 argF ornithine carbamoyltransferase 0.54 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli ECRC100 0.70 OKFHMN_11835 argF ornithine carbamoyltransferase 0.54 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03782 Ornithine carbamoyltransferase subunit I 0.54 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F low > 74
Escherichia coli ECOR27 0.70 NOLOHH_04090 argF ornithine carbamoyltransferase 0.54 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli ECRC101 0.70 MCAODC_02340 argF ornithine carbamoyltransferase 0.55 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 87
Escherichia coli BW25113 0.69 b4254 argI ornithine carbamoyltransferase 1 (NCBI) 0.54 b1835 yebU putative nucleolar proteins (VIMSS) low > 76
Klebsiella michiganensis M5al 0.69 BWI76_RS03010 ornithine carbamoyltransferase 0.51 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 92
Erwinia amylovora T8 0.69 OLJFJH_07335 ornithine carbamoyltransferase 0.51 OLJFJH_12985 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 58
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_0046 ornithine carbamoyltransferase (RefSeq) 0.11 DvMF_2026 Fmu (Sun) domain protein (RefSeq) low > 51
Shewanella amazonensis SB2B 0.28 Sama_0258 ornithine carbamoyltransferase (RefSeq) 0.44 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) low > 62
Shewanella sp. ANA-3 0.27 Shewana3_3903 ornithine carbamoyltransferase (RefSeq) 0.50 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) low > 73
Shewanella oneidensis MR-1 0.27 SO0277 argF ornithine carbamoyltransferase (NCBI ptt file) 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.26 Shew_0204 ornithine carbamoyltransferase (RefSeq) 0.48 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.15 B158DRAFT_1975 Ornithine carbamoyltransferase 0.43 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase low > 40
Mucilaginibacter yixingensis YX-36 DSM 26809 0.11 ABZR88_RS15495 acetylornithine carbamoyltransferase 0.15 ABZR88_RS00225 RNA methyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.10 Echvi_3849 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) 0.15 Echvi_1153 tRNA and rRNA cytosine-C5-methylases low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.10 CA264_06240 acetylornithine carbamoyltransferase 0.15 CA264_05610 rRNA methyltransferase low > 74

Not shown: 80 genomes with orthologs for CSW01_12720 only; 6 genomes with orthologs for CSW01_07545 only