Conservation of cofitness between CSW01_03745 and CSW01_07545 in Vibrio cholerae E7946 ATCC 55056

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03745 ferredoxin 1.0 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.46 5
Klebsiella pneumoniae MKP103 0.75 KDGMDA_28420 YfhL family 4Fe-4S dicluster ferredoxin 0.50 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Klebsiella michiganensis M5al 0.75 BWI76_RS21295 ferredoxin 0.51 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli BL21 0.75 ECD_02456 putative 4Fe-4S cluster-containing protein 0.54 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent — —
Escherichia coli ECOR27 0.75 NOLOHH_13120 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.54 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli BW25113 0.75 b2562 yfhL predicted 4Fe-4S cluster-containing protein (NCBI) 0.54 b1835 yebU putative nucleolar proteins (VIMSS) low > 76
Escherichia coli ECRC62 0.75 BNILDI_11920 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.54 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0084 4Fe-4S dicluster domain 0.53 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase low > 76
Escherichia coli ECRC99 0.73 KEDOAH_06775 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.54 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Serratia liquefaciens MT49 0.73 IAI46_19525 YfhL family 4Fe-4S dicluster ferredoxin 0.52 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01145 Ferredoxin YfhL 0.54 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F low > 74
Escherichia coli ECRC101 0.73 MCAODC_11975 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.55 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 87
Escherichia coli ECRC102 0.73 NIAGMN_19215 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.54 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Rahnella sp. WP5 0.73 EX31_RS21860 YfhL family 4Fe-4S dicluster ferredoxin 0.50 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 89
Enterobacter sp. TBS_079 0.73 MPMX20_03433 Ferredoxin YfhL 0.52 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F low > 85
Escherichia coli ECRC100 0.73 OKFHMN_21445 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.54 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli ECOR38 0.73 HEPCGN_20590 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.54 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF2470 4Fe-4S ferredoxin, iron-sulfur binding 0.54 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) low > 78
Escherichia coli ECRC98 0.73 JDDGAC_25110 yfhL 4Fe-4S dicluster ferredoxin YfhL 0.54 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 87
Escherichia fergusonii Becca 0.72 EFB2_01334 Ferredoxin YfhL 0.54 EFB2_02166 Ribosomal RNA small subunit methyltransferase F low > 86
Dickeya dianthicola 67-19 0.72 HGI48_RS15795 YfhL family 4Fe-4S dicluster ferredoxin 0.51 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 71
Escherichia coli Nissle 1917 0.72 ECOLIN_RS14495 4Fe-4S dicluster ferredoxin YfhL 0.54 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Dickeya dadantii 3937 0.72 DDA3937_RS15710 YfhL family 4Fe-4S dicluster ferredoxin 0.51 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 74
Dickeya dianthicola ME23 0.72 DZA65_RS16875 YfhL family 4Fe-4S dicluster ferredoxin 0.51 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Pantoea sp. MT58 0.71 IAI47_04905 YfhL family 4Fe-4S dicluster ferredoxin 0.53 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 76
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS14795 YfhL family 4Fe-4S dicluster ferredoxin 0.53 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 74
Pectobacterium carotovorum WPP14 0.69 HER17_RS05840 YfhL family 4Fe-4S dicluster ferredoxin 0.51 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Shewanella loihica PV-4 0.66 Shew_2785 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) 0.48 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) low > 60
Shewanella amazonensis SB2B 0.65 Sama_1002 ferredoxin, 4Fe-4S (RefSeq) 0.44 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) low > 62
Shewanella oneidensis MR-1 0.62 SO1251 ferredoxin, 4Fe-4S (NCBI ptt file) 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.62 Shewana3_1067 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) 0.50 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) — —
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_0772 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 0.43 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_00950 ferredoxin 0.15 CA264_05610 rRNA methyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS06810 4Fe-4S dicluster domain-containing protein 0.15 ABZR88_RS00225 RNA methyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.40 Echvi_2528 hypothetical protein 0.15 Echvi_1153 tRNA and rRNA cytosine-C5-methylases — —

Not shown: 53 genomes with orthologs for CSW01_03745 only; 8 genomes with orthologs for CSW01_07545 only