Conservation of cofitness between CSW01_03485 and CSW01_06870 in Vibrio cholerae E7946 ATCC 55056

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03485 branched-chain amino acid transport system II carrier protein 1.0 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE 0.39 6
Shewanella amazonensis SB2B 0.50 Sama_2740 branched-chain amino acid transport system II carrier protein BrnQ (RefSeq) 0.55 Sama_1825 radical activating enzyme (RefSeq) low > 62
Shewanella loihica PV-4 0.49 Shew_0769 branched-chain amino acid transport system II carrier protein (RefSeq) 0.56 Shew_2061 radical SAM domain-containing protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.45 Shewana3_3332 branched-chain amino acid transport system II carrier protein (RefSeq) 0.59 Shewana3_2163 radical activating enzyme (RefSeq) low > 73
Shewanella oneidensis MR-1 0.44 SO0949 brnQ branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file) 0.60 SO2501 radical activating enzyme (NCBI ptt file) low > 76
Pseudomonas aeruginosa PA14 0.42 IKLFDK_07615 branched-chain amino acid transport system II carrier protein 0.12 IKLFDK_04415 7-carboxy-7-deazaguanine synthase QueE low > 100
Pseudomonas segetis P6 0.41 MPMX49_02702 Branched-chain amino acid transport system 2 carrier protein 0.12 MPMX49_01693 7-carboxy-7-deazaguanine synthase low > 75
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_5860 Branched-chain amino acid transport system carrier protein 0.13 Pf6N2E2_5545 Queuosine Biosynthesis QueE Radical SAM low > 103
Pseudomonas sp. RS175 0.39 PFR28_03091 Branched-chain amino acid transport system 2 carrier protein 0.14 PFR28_03404 7-carboxy-7-deazaguanine synthase low > 88
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4264 Branched-chain amino acid transport system carrier protein 0.12 PfGW456L13_1861 Queuosine Biosynthesis QueE Radical SAM low > 87
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_19720 branched-chain amino acid ABC transporter substrate-binding protein 0.13 AO356_18065 7-carboxy-7-deazaguanine synthase low > 104
Dickeya dianthicola ME23 0.38 DZA65_RS05830 branched-chain amino acid transport system II carrier protein 0.56 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE low > 75
Dickeya dadantii 3937 0.38 DDA3937_RS05445 branched-chain amino acid transport system II carrier protein 0.60 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE low > 74
Pseudomonas sp. S08-1 0.38 OH686_01945 branched-chain amino acid transport system II carrier protein 0.12 OH686_19175 7-carboxy-7-deazaguanine synthase low > 80
Dickeya dianthicola 67-19 0.38 HGI48_RS05505 branched-chain amino acid transport system II carrier protein 0.56 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE low > 71
Escherichia fergusonii Becca 0.38 EFB2_03656 Branched-chain amino acid transport system 2 carrier protein 0.57 EFB2_01141 7-carboxy-7-deazaguanine synthase low > 86
Escherichia coli Nissle 1917 0.38 ECOLIN_RS02420 branched-chain amino acid transporter carrier protein BrnQ 0.57 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE low > 55
Escherichia coli ECOR38 0.38 HEPCGN_07175 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.57 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE low > 88
Escherichia coli ECOR27 0.38 NOLOHH_01465 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.57 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE low > 76
Escherichia coli BW25113 0.38 b0401 brnQ predicted branched chain amino acid transporter (LIV-II) (NCBI) 0.57 b2777 ygcF hypothetical protein (NCBI) low > 76
Escherichia coli ECRC100 0.38 OKFHMN_08535 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.57 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE low > 79
Escherichia coli BL21 0.38 ECD_00349 branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val 0.57 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis low > 61
Escherichia coli ECRC62 0.38 BNILDI_22880 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.57 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE low > 75
Pseudomonas sp. DMC3 0.38 GFF2525 Branched-chain amino acid transport system 2 carrier protein 0.14 GFF5176 7-carboxy-7-deazaguanine synthase low > 89
Escherichia coli ECRC101 0.38 MCAODC_27760 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.57 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_03275 Branched-chain amino acid transport system 2 carrier protein 0.57 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase low > 74
Escherichia coli ECRC98 0.38 JDDGAC_12190 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.57 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE low > 87
Escherichia coli ECRC102 0.38 NIAGMN_06590 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.57 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE low > 80
Escherichia coli ECRC99 0.38 KEDOAH_19430 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.57 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE — —
Klebsiella michiganensis M5al 0.37 BWI76_RS06240 branched-chain amino acid transport system 2 carrier protein BrnQ 0.56 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF4299 Branched-chain amino acid transport system carrier protein 0.57 GFF4831 Queuosine Biosynthesis QueE Radical SAM low > 78
Enterobacter sp. TBS_079 0.37 MPMX20_00988 Branched-chain amino acid transport system 2 carrier protein 0.56 MPMX20_03645 7-carboxy-7-deazaguanine synthase low > 85
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2573 branched-chain amino acid uptake carrier 0.56 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE low > 76
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS08980 branched-chain amino acid transport system II carrier protein 0.13 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.28 81
Pseudomonas fluorescens SBW25 0.37 PFLU_RS08980 branched-chain amino acid transport system II carrier protein 0.13 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE low > 109
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_3686 Branched-chain amino acid transport system carrier protein 0.12 Pf1N1B4_629 Queuosine Biosynthesis QueE Radical SAM low > 87
Pectobacterium carotovorum WPP14 0.37 HER17_RS16020 branched-chain amino acid transport system II carrier protein 0.59 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE low > 75
Klebsiella pneumoniae MKP103 0.37 KDGMDA_14315 branched-chain amino acid transporter carrier protein BrnQ 0.56 KDGMDA_03310 7-carboxy-7-deazaguanine synthase QueE low > 95
Pseudomonas putida KT2440 0.36 PP_4184 branched chain amino acid transporter 0.12 PP_1225 7-carboxy-7-deazaguanine synthase low > 96
Pseudomonas sp. BP01 0.36 JOY50_RS19100 brnQ branched-chain amino acid transport system II carrier protein 0.12 JOY50_RS01775 queE 7-carboxy-7-deazaguanine synthase QueE low > 84
Serratia liquefaciens MT49 0.36 IAI46_04795 branched-chain amino acid transport system II carrier protein 0.58 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE low > 86
Pantoea sp. MT58 0.36 IAI47_14835 branched-chain amino acid transporter carrier protein BrnQ 0.56 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE low > 76
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS10315 branched-chain amino acid transporter carrier protein BrnQ 0.55 PagCFBP13505_RS16825 7-carboxy-7-deazaguanine synthase QueE low > 74
Erwinia tracheiphila SCR3 0.35 LU632_RS18890 brnQ branched-chain amino acid transport system II carrier protein 0.57 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE low > 74
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_01914 Branched-chain amino acid transport system 2 carrier protein 0.13 GEMAOFIL_04633 7-carboxy-7-deazaguanine synthase low > 93
Erwinia amylovora T8 0.35 OLJFJH_18165 branched-chain amino acid transporter carrier protein BrnQ 0.57 OLJFJH_09270 7-carboxy-7-deazaguanine synthase QueE low > 58
Pseudomonas simiae WCS417 0.35 PS417_08920 branched-chain amino acid ABC transporter substrate-binding protein 0.13 PS417_22405 7-carboxy-7-deazaguanine synthase low > 88
Rahnella sp. WP5 0.34 EX31_RS22065 branched-chain amino acid transport system II carrier protein 0.58 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE low > 89
Cellulophaga baltica 18 0.17 M666_RS05680 branched-chain amino acid transport system II carrier protein 0.20 M666_RS00760 7-carboxy-7-deazaguanine synthase QueE low > 67

Not shown: 9 genomes with orthologs for CSW01_03485 only; 47 genomes with orthologs for CSW01_06870 only