Conservation of cofitness between CSW01_03340 and CSW01_05120 in Vibrio cholerae E7946 ATCC 55056

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03340 ribosomal RNA large subunit methyltransferase E 1.0 CSW01_05120 sodium:proton antiporter 0.47 6
Shewanella amazonensis SB2B 0.77 Sama_0953 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.67 Sama_2095 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.77 Shew_2835 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.67 Shew_1515 Na+/H+ antiporter NhaC (RefSeq) — —
Shewanella sp. ANA-3 0.77 Shewana3_1022 rrmJ 23S rRNA methyltransferase J (RefSeq) 0.66 Shewana3_2542 Na+/H+ antiporter NhaC (RefSeq) — —
Shewanella oneidensis MR-1 0.76 SO1196 rrmJ ribosomal RNA large subunit methyltransferase J (NCBI ptt file) 0.66 SO2757 membrane protein, putative (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.61 HP15_3615 ribosomal RNA large subunit methyltransferase J 0.63 HP15_3761 transport protein low > 73
Acinetobacter baumannii LAC-4 0.60 RR41_RS04180 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.55 RR41_RS17515 TRAP transporter large permease subunit low > 55
Acinetobacter radioresistens SK82 0.60 MPMX26_00771 Ribosomal RNA large subunit methyltransferase E 0.57 MPMX26_00216 hypothetical protein low > 36
Pseudomonas aeruginosa MRSN321 0.60 DY961_RS09515 rlmE;go_function=rRNA 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.55 DY961_RS03950 Na+/H+ antiporter family protein — —
Pseudomonas aeruginosa PUPa3 0.60 DQ20_RS52520 rlmE;go_function=rRNA 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.55 DQ20_RS34980 Na+/H+ antiporter family protein — —
Pseudomonas aeruginosa PA14 0.60 IKLFDK_29835 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.55 IKLFDK_13320 sodium:proton antiporter — —
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_04954 Ribosomal RNA large subunit methyltransferase E 0.53 GEMAOFIL_02167 hypothetical protein — —
Pseudomonas segetis P6 0.59 MPMX49_01191 Ribosomal RNA large subunit methyltransferase E 0.54 MPMX49_02574 hypothetical protein — —
Pseudomonas simiae WCS417 0.59 PS417_24020 23S rRNA methyltransferase 0.53 PS417_10285 sodium:proton antiporter — —
Pseudomonas sp. RS175 0.59 PFR28_00081 Ribosomal RNA large subunit methyltransferase E 0.53 PFR28_02845 hypothetical protein — —
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_07460 23S rRNA methyltransferase 0.56 AO356_21290 sodium:proton antiporter — —
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_3360 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.54 Pf6N2E2_43 Histidine permease YuiF — —
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_05610 23S rRNA methyltransferase 0.55 AO353_19790 sodium:proton antiporter — —
Pseudomonas orientalis W4I3 0.59 QF045_RS26275 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.53 QF045_RS12365 Na+/H+ antiporter NhaC family protein — —
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS25860 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.53 PFLU_RS10450 TRAP transporter large permease subunit — —
Pseudomonas fluorescens SBW25 0.58 PFLU_RS25860 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.53 PFLU_RS10450 TRAP transporter large permease subunit — —
Pseudomonas putida KT2440 0.58 PP_4719 Ribosomal RNA large subunit methyltransferase E 0.54 PP_3556 conserved membrane protein of unknown function — —
Pseudomonas sp. BP01 0.58 JOY50_RS26785 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.55 JOY50_RS28160 Na+/H+ antiporter family protein — —
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_5095 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.54 PfGW456L13_2455 Histidine permease YuiF — —
Pseudomonas sp. S08-1 0.57 OH686_23800 23S rRNA (uridine(2552)-2'-O)-methyltransferase 0.55 OH686_00080 Histidine permease YuiF low > 80
Pseudomonas sp. SVBP6 0.56 COO64_RS15220 rlmE 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE 0.54 COO64_RS17285 Na+/H+ antiporter family protein — —
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_1168 Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-) 0.54 Pf1N1B4_103 Histidine permease YuiF — —
Pseudomonas sp. DMC3 0.56 GFF4981 Ribosomal RNA large subunit methyltransferase E 0.55 GFF1368 hypothetical protein — —
Pseudomonas stutzeri RCH2 0.56 Psest_1346 23S rRNA methylase 0.51 Psest_2011 Predicted permease — —

Not shown: 76 genomes with orthologs for CSW01_03340 only; 1 genomes with orthologs for CSW01_05120 only