Conservation of cofitness between CSW01_02875 and CSW01_04845 in Vibrio cholerae E7946 ATCC 55056

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02875 DNA recombination/repair protein RecA 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.60 7
Pectobacterium carotovorum WPP14 0.83 HER17_RS05045 recombinase RecA 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Rahnella sp. WP5 0.82 EX31_RS07800 recombinase RecA 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Dickeya dianthicola ME23 0.82 DZA65_RS17450 recombinase RecA 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA — —
Dickeya dadantii 3937 0.82 DDA3937_RS16245 recombinase RecA 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Dickeya dianthicola 67-19 0.82 HGI48_RS16355 recombinase RecA 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA low > 71
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_01625 recA recombinase RecA 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC — —
Shewanella oneidensis MR-1 0.81 SO3430 recA recA protein (NCBI ptt file) 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Erwinia tracheiphila SCR3 0.81 LU632_RS15735 recA recombinase RecA 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Enterobacter sp. TBS_079 0.81 MPMX20_03580 Protein RecA 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA low > 85
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2785 protein RecA 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase — —
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13505_RS16670 recombinase RecA 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Klebsiella pneumoniae MKP103 0.81 KDGMDA_02850 recombinase RecA 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.35 8
Shewanella sp. ANA-3 0.81 Shewana3_1126 recA recombinase A (RefSeq) 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4693 RecA protein 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pantoea sp. MT58 0.80 IAI47_04300 recombinase RecA 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA low > 76
Klebsiella michiganensis M5al 0.80 BWI76_RS22180 recombinase RecA 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase — —
Escherichia coli ECRC99 0.80 KEDOAH_07430 recA recombinase RecA 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia fergusonii Becca 0.80 EFB2_01225 Protein RecA 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli BL21 0.80 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_01035 Protein RecA 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Escherichia coli Nissle 1917 0.80 ECOLIN_RS15060 recombinase RecA 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC62 0.80 BNILDI_11105 recA recombinase RecA 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Escherichia coli ECRC101 0.80 MCAODC_11230 recA recombinase RecA 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 88
Escherichia coli ECRC98 0.80 JDDGAC_24370 recA recombinase RecA 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC100 0.80 OKFHMN_20705 recA recombinase RecA 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli BW25113 0.80 b2699 recA recombinase A (NCBI) 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) low > 76
Escherichia coli ECRC102 0.80 NIAGMN_18475 recA recombinase RecA 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECOR27 0.80 NOLOHH_12545 recA recombinase RecA 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 76
Escherichia coli ECOR38 0.80 HEPCGN_19900 recA recombinase RecA 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 88
Shewanella amazonensis SB2B 0.80 Sama_1046 recA recombinase A (RefSeq) 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Erwinia amylovora T8 0.80 OLJFJH_09575 recombinase RecA 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA low > 58
Shewanella loihica PV-4 0.80 Shew_1215 recA recombinase A (RefSeq) 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) low > 60
Serratia liquefaciens MT49 0.80 IAI46_03840 recombinase RecA 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Alteromonas macleodii MIT1002 0.77 MIT1002_00955 Recombinase A 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2993 RecA protein 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_05670 recombinase RecA 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas sp. RS175 0.73 PFR28_00472 Protein RecA 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_16805 recombinase RecA 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Pseudomonas sp. S08-1 0.73 OH686_18205 protein RecA 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas aeruginosa PA14 0.73 IKLFDK_18465 recombinase RecA 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase low > 100
Pseudomonas segetis P6 0.73 MPMX49_03330 Protein RecA 0.46 MPMX49_01056 D-alanyl-D-alanine carboxypeptidase DacC low > 75
Pseudomonas sp. DMC3 0.73 GFF2111 Protein RecA 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC low > 89
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3143 RecA protein 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas lactucae CFBP13502 0.73 GEMAOFIL_01333 Protein RecA 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC low > 93
Pseudomonas sp. SVBP6 0.73 COO64_RS19930 recA recombinase RecA 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein low > 93
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4668 RecA protein 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS05885 recombinase RecA 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens SBW25 0.72 PFLU_RS05885 recombinase RecA 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1531 protein RecA 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Pseudomonas simiae WCS417 0.72 PS417_05815 recombinase RecA 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase low > 88
Pseudomonas stutzeri RCH2 0.72 Psest_2872 protein RecA 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1378 RecA protein 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1378 RecA protein 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas putida KT2440 0.72 PP_1629 Protein RecA 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase low > 96
Pseudomonas sp. BP01 0.72 JOY50_RS23780 recA recombinase RecA 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein low > 84
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14695 recombinase RecA 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Marinobacter adhaerens HP15 0.71 HP15_1048 recombinase A 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Acinetobacter radioresistens SK82 0.71 MPMX26_01308 Protein RecA 0.39 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA low > 36
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS14980 recombinase RecA 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03740 recA recombinase RecA 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase low > 53
Acinetobacter baumannii LAC-4 0.71 RR41_RS08110 recombinase RecA 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 — —
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13640 recombinase RecA 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase — —
Lysobacter sp. OAE881 0.69 ABIE51_RS07800 recombinase RecA 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS00660 recombinase RecA 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Methylophilus sp. DMC18 0.67 GFF841 Protein RecA 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC low > 43
Castellaniella sp019104865 MT123 0.67 ABCV34_RS04460 recombinase RecA 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.3111.1 RecA protein 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Sphingobium sp. HT1-2 0.67 GFF3120 RecA protein 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS16360 recombinase RecA 0.37 BPHYT_RS02415 cytochrome C550 — —
Rhodospirillum rubrum S1H 0.66 Rru_A2819 RecA DNA recombination protein (NCBI) 0.38 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Agrobacterium fabrum C58 0.66 Atu1874 RecA protein 0.21 Atu1499 penicillin binding protein low > 89
Sphingomonas koreensis DSMZ 15582 0.66 Ga0059261_0204 protein RecA 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS02335 recombinase RecA 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein — —
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04208 RecA protein 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Paraburkholderia graminis OAS925 0.66 ABIE53_003448 recombination protein RecA 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Dechlorosoma suillum PS 0.66 Dsui_0707 protein RecA 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Azospirillum brasilense Sp245 0.66 AZOBR_RS11095 recombinase RecA 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Sinorhizobium meliloti 1021 0.66 SMc00760 recombinase A 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Rhodopseudomonas palustris CGA009 0.66 TX73_019940 recombinase RecA 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase — —
Azospirillum sp. SherDot2 0.66 MPMX19_00869 Protein RecA 0.35 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Xanthobacter sp. DMC5 0.65 GFF1169 Protein RecA 0.26 GFF689 D-alanyl-D-alanine carboxypeptidase DacC — —
Magnetospirillum magneticum AMB-1 0.65 AMB_RS03205 DNA recombination/repair protein RecA 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase low > 64
Phaeobacter inhibens DSM 17395 0.65 PGA1_c15260 protein recA (recombinase A) 0.26 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS03270 protein RecA 0.35 HSERO_RS21530 cytochrome C550 low > 78
Ralstonia solanacearum PSI07 0.64 RPSI07_RS21260 recombinase RecA 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Variovorax sp. OAS795 0.64 ABID97_RS02275 recombinase RecA 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS07965 recombinase RecA 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1255 RecA protein 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Ralstonia solanacearum UW163 0.63 UW163_RS01625 recombinase RecA 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Bosea sp. OAE506 0.63 ABIE41_RS13335 recombinase RecA 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS12010 recombinase RecA 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03080 recombinase RecA 0.39 RR42_RS01680 cytochrome C550 low > 128
Ralstonia solanacearum GMI1000 0.63 RS_RS02760 DNA recombination/repair protein RecA 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF2500 RecA protein 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.70 23
Dinoroseobacter shibae DFL-12 0.60 Dshi_1643 recA protein (RefSeq) 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —

Not shown: 22 genomes with orthologs for CSW01_02875 only; 0 genomes with orthologs for CSW01_04845 only