Conservation of cofitness between CSW01_03705 and CSW01_03780 in Vibrio cholerae E7946 ATCC 55056

113 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03705 chaperone protein ClpB 1.0 CSW01_03780 polyphosphate kinase 1 0.53 10
Shewanella amazonensis SB2B 0.80 Sama_2603 clpB protein (RefSeq) 0.56 Sama_2011 polyphosphate kinase (RefSeq) low > 62
Shewanella sp. ANA-3 0.80 Shewana3_3169 ATPase (RefSeq) 0.57 Shewana3_2417 polyphosphate kinase (RefSeq) low > 73
Shewanella loihica PV-4 0.80 Shew_2948 ATPase (RefSeq) 0.56 Shew_3079 polyphosphate kinase (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF4184 ClpB protein 0.64 GFF2167 Polyphosphate kinase (EC 2.7.4.1) low > 78
Alteromonas macleodii MIT1002 0.78 MIT1002_02677 Heat shock protein F84.1 0.53 MIT1002_00872 Polyphosphate kinase low > 70
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2693 ATP-dependent chaperone ClpB 0.66 EX28DRAFT_0166 polyphosphate kinase 1 low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_03461 Chaperone protein ClpB 0.66 MPMX20_03356 Polyphosphate kinase low > 85
Dickeya dianthicola ME23 0.78 DZA65_RS17320 ATP-dependent chaperone ClpB 0.65 DZA65_RS16045 polyphosphate kinase 1 low > 75
Escherichia coli BL21 0.78 ECD_02482 protein disaggregation chaperone 0.66 ECD_02393 polyphosphate kinase, component of RNA degradosome low > 61
Escherichia coli ECRC99 0.78 KEDOAH_06955 clpB ATP-dependent chaperone ClpB 0.66 KEDOAH_06420 ppk1 polyphosphate kinase 1
Escherichia coli ECOR38 0.78 HEPCGN_20390 clpB ATP-dependent chaperone ClpB 0.66 HEPCGN_20965 ppk1 polyphosphate kinase 1 low > 88
Klebsiella michiganensis M5al 0.78 BWI76_RS21440 ATP-dependent chaperone ClpB 0.65 BWI76_RS20995 RNA degradosome polyphosphate kinase low > 92
Escherichia fergusonii Becca 0.78 EFB2_01298 Chaperone protein ClpB 0.66 EFB2_01397 Polyphosphate kinase low > 86
Escherichia coli BW25113 0.78 b2592 clpB protein disaggregation chaperone (NCBI) 0.66 b2501 ppk polyphosphate kinase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_01114 Chaperone protein ClpB 0.66 OHPLBJKB_01225 Polyphosphate kinase low > 74
Escherichia coli ECOR27 0.78 NOLOHH_12940 clpB ATP-dependent chaperone ClpB 0.66 NOLOHH_13450 ppk1 polyphosphate kinase 1 low > 76
Escherichia coli ECRC98 0.78 JDDGAC_24930 clpB ATP-dependent chaperone ClpB 0.66 JDDGAC_25745 ppk1 polyphosphate kinase 1 low > 87
Escherichia coli ECRC100 0.78 OKFHMN_21265 clpB ATP-dependent chaperone ClpB 0.66 OKFHMN_21800 ppk1 polyphosphate kinase 1 low > 79
Escherichia coli ECRC102 0.78 NIAGMN_19035 clpB ATP-dependent chaperone ClpB 0.66 NIAGMN_19570 ppk1 polyphosphate kinase 1 low > 80
Escherichia coli ECRC62 0.78 BNILDI_11745 clpB ATP-dependent chaperone ClpB 0.66 BNILDI_12260 ppk1 polyphosphate kinase 1 low > 75
Klebsiella pneumoniae MKP103 0.78 KDGMDA_02125 ATP-dependent chaperone ClpB 0.65 KDGMDA_27815 polyphosphate kinase 1 low > 95
Escherichia coli ECRC101 0.78 MCAODC_11795 clpB ATP-dependent chaperone ClpB 0.66 MCAODC_12330 ppk1 polyphosphate kinase 1 low > 88
Escherichia coli Nissle 1917 0.78 ECOLIN_RS14665 ATP-dependent chaperone ClpB 0.66 ECOLIN_RS14200 polyphosphate kinase 1
Dickeya dianthicola 67-19 0.78 HGI48_RS16225 ATP-dependent chaperone ClpB 0.65 HGI48_RS15225 polyphosphate kinase 1 low > 71
Pectobacterium carotovorum WPP14 0.77 HER17_RS05410 ATP-dependent chaperone ClpB 0.65 HER17_RS06425 polyphosphate kinase 1 low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS16100 ATP-dependent chaperone ClpB 0.65 DDA3937_RS15150 polyphosphate kinase 1 low > 74
Serratia liquefaciens MT49 0.77 IAI46_03995 ATP-dependent chaperone ClpB 0.65 IAI46_18915 polyphosphate kinase 1 low > 86
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS16530 ATP-dependent chaperone ClpB 0.64 PagCFBP13505_RS15045 polyphosphate kinase 1 low > 74
Pantoea sp. MT58 0.77 IAI47_04435 ATP-dependent chaperone ClpB 0.64 IAI47_05155 polyphosphate kinase 1 low > 76
Rahnella sp. WP5 0.76 EX31_RS07560 ATP-dependent chaperone ClpB 0.65 EX31_RS22680 polyphosphate kinase 1 low > 89
Erwinia amylovora T8 0.76 OLJFJH_09740 ATP-dependent chaperone ClpB 0.63 OLJFJH_10565 polyphosphate kinase 1 low > 58
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_26855 clpB ATP-dependent chaperone ClpB 0.64 IJEDHG_18355 ppk1 polyphosphate kinase 1 low > 61
Erwinia tracheiphila SCR3 0.76 LU632_RS16935 clpB ATP-dependent chaperone ClpB 0.64 LU632_RS08260 ppk1 polyphosphate kinase 1 low > 74
Marinobacter adhaerens HP15 0.74 HP15_529 protein disaggregation chaperone 0.25 HP15_3334 polyphosphate kinase 0.62 26
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2535 ATP-dependent chaperone ClpB 0.28 B158DRAFT_2312 polyphosphate kinase 1 low > 40
Pseudomonas sp. SVBP6 0.72 COO64_RS11065 clpB ATP-dependent chaperone ClpB 0.27 COO64_RS01080 ppk1 polyphosphate kinase 1 low > 93
Lysobacter sp. OAE881 0.72 ABIE51_RS04925 ATP-dependent chaperone ClpB 0.25 ABIE51_RS14230 polyphosphate kinase 1 low > 62
Pseudomonas sp. RS175 0.71 PFR28_03746 Chaperone protein ClpB 0.27 PFR28_04345 Polyphosphate kinase low > 88
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_15935 ATP-dependent chaperone ClpB 0.27 AO356_12895 polyphosphate kinase low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_5129 ClpB protein 0.27 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) low > 103
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2824 ClpB protein 0.27 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) low > 87
Pseudomonas sp. S08-1 0.71 OH686_16420 ATP-dependent chaperone protein ClpB 0.28 OH686_13995 polyphosphate kinase 1 low > 80
Pseudomonas lactucae CFBP13502 0.71 GEMAOFIL_00971 Chaperone protein ClpB 0.27 GEMAOFIL_05622 Polyphosphate kinase low > 93
Pseudomonas simiae WCS417 0.71 PS417_03830 protein disaggregation chaperone 0.27 PS417_27435 polyphosphate kinase low > 88
Pseudomonas aeruginosa PA14 0.71 IKLFDK_00820 Chaperone protein ClpB 0.28 IKLFDK_27250 polyphosphate kinase 1 low > 100
Pseudomonas fluorescens SBW25 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.27 PFLU_RS29095 polyphosphate kinase 1 low > 109
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.27 PFLU_RS29095 polyphosphate kinase 1 low > 109
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_1495 ClpB protein 0.27 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) low > 87
Pseudomonas stutzeri RCH2 0.71 Psest_0711 ATP-dependent chaperone ClpB 0.27 Psest_3732 polyphosphate kinase 1 low > 67
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.1382.1 ClpB protein 0.24 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) low > 74
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.27 Psyr_0293 Polyphosphate kinase 0.46 18
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_14230 ATP-dependent chaperone ClpB 0.27 AO353_08885 polyphosphate kinase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.27 Psyr_0293 Polyphosphate kinase 0.46 26
Pseudomonas sp. BP01 0.70 JOY50_RS27140 clpB ATP-dependent chaperone ClpB 0.27 JOY50_RS22545 ppk1 polyphosphate kinase 1 low > 84
Pseudomonas sp. DMC3 0.70 GFF4006 Chaperone protein ClpB 0.27 GFF336 Polyphosphate kinase low > 89
Pseudomonas putida KT2440 0.70 PP_0625 Chaperone protein ClpB 0.27 PP_5217 Polyphosphate kinase low > 96
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS10940 ATP-dependent chaperone ClpB 0.28 ABZR86_RS07490 polyphosphate kinase 1 low > 74
Pseudomonas segetis P6 0.70 MPMX49_03920 Chaperone protein ClpB 0.27 MPMX49_04503 Polyphosphate kinase low > 75
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS05055 ATP-dependent chaperone ClpB 0.28 LRK53_RS12780 polyphosphate kinase 1 low > 59
Rhodanobacter denitrificans MT42 0.69 LRK55_RS04735 ATP-dependent chaperone ClpB 0.29 LRK55_RS15755 polyphosphate kinase 1 0.88 1
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_01800 clpB ATP-dependent chaperone ClpB 0.28 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase low > 53
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS04955 ATP-dependent chaperone ClpB 0.29 LRK54_RS16000 polyphosphate kinase 1 low > 59
Methylophilus sp. DMC18 0.68 GFF1788 Chaperone protein ClpB 0.25 GFF2750 Polyphosphate kinase low > 43
Dechlorosoma suillum PS 0.67 Dsui_2161 ATP-dependent chaperone ClpB 0.30 Dsui_2814 polyphosphate kinase 1 low > 51
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00817 ATP-dependent Clp protease ATP-binding subunit ClpB 0.28 H281DRAFT_04418 polyphosphate kinase 0.41 17
Paraburkholderia graminis OAS925 0.67 ABIE53_002033 ATP-dependent Clp protease ATP-binding subunit ClpB 0.28 ABIE53_002988 polyphosphate kinase low > 113
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS22370 ATP-dependent chaperone ClpB 0.28 QEN71_RS04860 polyphosphate kinase 1 low > 153
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS08990 protein disaggregation chaperone 0.28 BPHYT_RS14110 polyphosphate kinase low > 109
Ralstonia solanacearum PSI07 0.65 RPSI07_RS17450 ATP-dependent chaperone ClpB 0.27 RPSI07_RS15330 polyphosphate kinase 1 0.74 1
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS12455 protein disaggregation chaperone 0.28 RR42_RS13435 polyphosphate kinase 0.43 3
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS00030 ATP-dependent chaperone ClpB 0.27 RALBFv3_RS02115 polyphosphate kinase 1 low > 76
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB 0.28 ABZR87_RS14065 polyphosphate kinase 1 low > 80
Ralstonia solanacearum UW163 0.65 UW163_RS13360 ATP-dependent chaperone ClpB 0.27 UW163_RS15425 polyphosphate kinase 1
Ralstonia solanacearum GMI1000 0.65 RS_RS06695 chaperone protein ClpB 0.26 RS_RS07705 polyphosphate kinase 1 low > 80
Acidovorax sp. GW101-3H11 0.65 Ac3H11_1474 ClpB protein 0.24 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) 0.27 45
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS10545 protein disaggregation chaperone 0.28 HSERO_RS06305 polyphosphate kinase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF3942 ClpB protein 0.23 GFF4226 Polyphosphate kinase (EC 2.7.4.1) low > 90
Acinetobacter radioresistens SK82 0.64 MPMX26_01096 Chaperone protein ClpB 0.29 MPMX26_02335 Polyphosphate kinase low > 36
Acinetobacter baumannii LAC-4 0.63 RR41_RS10060 ATP-dependent chaperone ClpB 0.28 RR41_RS08880 polyphosphate kinase 1 low > 55
Variovorax sp. SCN45 0.63 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) 0.25 GFF1089 Polyphosphate kinase (EC 2.7.4.1) low > 127
Variovorax sp. OAS795 0.63 ABID97_RS10930 ATP-dependent chaperone ClpB 0.25 ABID97_RS14575 polyphosphate kinase 1 low > 91
Castellaniella sp019104865 MT123 0.62 ABCV34_RS06205 ATP-dependent chaperone ClpB 0.26 ABCV34_RS15580 polyphosphate kinase 1 low > 48
Azospirillum sp. SherDot2 0.58 MPMX19_02442 Chaperone protein ClpB 0.26 MPMX19_01149 Polyphosphate kinase low > 112
Azospirillum brasilense Sp245 0.58 AZOBR_RS18950 ATPase AAA 0.27 AZOBR_RS16235 polyphosphate kinase low > 97
Rhizobium sp. OAE497 0.57 ABIE40_RS17260 ATP-dependent chaperone ClpB 0.26 ABIE40_RS06575 RNA degradosome polyphosphate kinase 0.31 69
Agrobacterium fabrum C58 0.56 Atu4177 ATP-dependent Clp protease, ATP-binding subunit 0.26 Atu1144 polyphosphate kinase
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS11010 ATP-dependent chaperone ClpB 0.27 A4249_RS08195 RNA degradosome polyphosphate kinase
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_1434 ATP-dependent chaperone ClpB 0.27 Ga0059261_0225 polyphosphate kinase 1 low > 68
Bosea sp. OAE506 0.56 ABIE41_RS23785 ATP-dependent chaperone ClpB 0.26 ABIE41_RS16125 RNA degradosome polyphosphate kinase low > 77
Caulobacter crescentus NA1000 0.56 CCNA_00922 ClpB protein 0.27 CCNA_01782 polyphosphate kinase 1 low > 66
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_00922 ClpB protein 0.27 CCNA_01782 polyphosphate kinase 1 low > 67
Rhodospirillum rubrum S1H 0.56 Rru_A0753 Chaperone clpB (NCBI) 0.26 Rru_A2161 Polyphosphate kinase (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.56 TX73_023005 ATP-dependent chaperone ClpB 0.25 TX73_015770 RNA degradosome polyphosphate kinase 0.41 31
Sinorhizobium meliloti 1021 0.55 SMc02433 ATP-dependent protease 0.25 SMc00618 polyphosphate kinase low > 103
Synechocystis sp000284455 PCC 6803 0.55 SGL_RS11615 ATP-dependent chaperone ClpB 0.27 SGL_RS15845 polyphosphate kinase 1 low > 52
Synechococcus elongatus PCC 7942 0.55 Synpcc7942_1089 clpB ATPase 0.29 Synpcc7942_1566 ppk polyphosphate kinase low > 38
Dinoroseobacter shibae DFL-12 0.55 Dshi_0617 ATPase AAA-2 domain protein (RefSeq) 0.25 Dshi_0740 Polyphosphate kinase (RefSeq) low > 64
Magnetospirillum magneticum AMB-1 0.55 AMB_RS07865 ATP-dependent chaperone ClpB 0.27 AMB_RS14295 RNA degradosome polyphosphate kinase low > 64
Sphingobium sp. HT1-2 0.55 GFF1039 Chaperone protein ClpB (ATP-dependent unfoldase) 0.26 GFF2471 Polyphosphate kinase (EC 2.7.4.1) low > 95
Xanthobacter sp. DMC5 0.54 GFF3670 Chaperone protein ClpB 0.27 GFF3542 Polyphosphate kinase
Mycobacterium tuberculosis H37Rv 0.53 Rv0384c Probable endopeptidase ATP binding protein (chain B) ClpB (ClpB protein) (heat shock protein F84.1) 0.26 Rv2984 Polyphosphate kinase PPK (polyphosphoric acid kinase) (ATP-polyphosphate phosphotransferase)
Bacteroides stercoris CC31F 0.53 HMPREF1181_RS11960 ATP-dependent chaperone ClpB 0.31 HMPREF1181_RS08035 RNA degradosome polyphosphate kinase low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.53 ABZR88_RS10630 ATP-dependent chaperone ClpB 0.41 ABZR88_RS04845 polyphosphate kinase 1 low > 71
Bacteroides ovatus ATCC 8483 0.53 BACOVA_05393 ATP-dependent chaperone protein ClpB 0.36 BACOVA_03769 polyphosphate kinase 1 low > 96
Bacteroides thetaiotaomicron VPI-5482 0.52 BT4597 endopeptidase Clp ATP-binding chain B (NCBI ptt file) 0.36 BT0541 Polyphosphate kinase (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.52 HMPREF1078_RS00500 ATP-dependent chaperone ClpB 0.35 HMPREF1078_RS16770 RNA degradosome polyphosphate kinase low > 61
Bifidobacterium breve UCC2003 0.52 BBR_RS19700 ATP-dependent chaperone ClpB 0.26 BBR_RS19645 RNA degradosome polyphosphate kinase low > 34
Cellulophaga baltica 18 0.52 M666_RS14965 ATP-dependent chaperone ClpB 0.43 M666_RS11490 polyphosphate kinase 1 low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_14135 ATP-dependent chaperone ClpB 0.35 CA264_15725 polyphosphate kinase 1 low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS12775 ATP-dependent chaperone ClpB 0.40 CA265_RS09830 polyphosphate kinase 1 low > 88
Phocaeicola dorei CL03T12C01 0.51 ABI39_RS18885 ATP-dependent chaperone ClpB 0.36 ABI39_RS14955 RNA degradosome polyphosphate kinase low > 72
Phocaeicola vulgatus CL09T03C04 0.51 HMPREF1058_RS04980 ATP-dependent chaperone ClpB 0.32 HMPREF1058_RS02340 RNA degradosome polyphosphate kinase low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.50 Echvi_0754 ATP-dependent chaperone ClpB 0.24 Echvi_2996 polyphosphate kinase 1 low > 79

Not shown: 5 genomes with orthologs for CSW01_03705 only; 0 genomes with orthologs for CSW01_03780 only