Conservation of cofitness between CSW01_12705 and CSW01_03700 in Vibrio cholerae E7946 ATCC 55056

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12705 RNA polymerase-associated protein RapA 1.0 CSW01_03700 multi-copper polyphenol oxidoreductase 0.61 12
Serratia liquefaciens MT49 0.67 IAI46_03275 RNA polymerase-associated protein RapA 0.48 IAI46_03990 polyphenol oxidase low > 87
Dickeya dadantii 3937 0.65 DDA3937_RS18235 RNA polymerase-associated protein RapA 0.49 DDA3937_RS16105 polyphenol oxidase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.47 GFF4183 COG1496: Uncharacterized conserved protein low > 78
Rahnella sp. WP5 0.65 EX31_RS03745 RNA polymerase-associated protein RapA 0.42 EX31_RS07565 polyphenol oxidase low > 89
Escherichia coli ECRC101 0.65 MCAODC_01315 rapA RNA polymerase-associated protein RapA 0.47 MCAODC_11785 yfiH purine nucleoside phosphorylase YfiH 0.49 77
Escherichia coli ECRC102 0.65 NIAGMN_08650 rapA RNA polymerase-associated protein RapA 0.47 NIAGMN_19025 yfiH purine nucleoside phosphorylase YfiH low > 80
Escherichia coli ECRC99 0.65 KEDOAH_17355 rapA RNA polymerase-associated protein RapA 0.47 KEDOAH_06965 yfiH purine nucleoside phosphorylase YfiH — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03599 RNA polymerase-associated protein RapA 0.46 OHPLBJKB_01113 Polyphenol oxidase low > 74
Escherichia coli ECRC100 0.65 OKFHMN_10800 rapA RNA polymerase-associated protein RapA 0.47 OKFHMN_21255 yfiH purine nucleoside phosphorylase YfiH 0.80 56
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00315 RNA polymerase-associated protein RapA 0.47 ECOLIN_RS14670 purine nucleoside phosphorylase YfiH low > 55
Escherichia coli BW25113 0.65 b0059 hepA ATP-dependent helicase HepA (NCBI) 0.47 b2593 yfiH hypothetical protein (NCBI) low > 76
Escherichia coli ECRC98 0.65 JDDGAC_14395 rapA RNA polymerase-associated protein RapA 0.47 JDDGAC_24920 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia coli ECOR27 0.65 NOLOHH_03145 rapA RNA polymerase-associated protein RapA 0.47 NOLOHH_12930 yfiH purine nucleoside phosphorylase YfiH 0.95 14
Escherichia coli BL21 0.65 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase 0.47 ECD_02483 UPF0124 family protein low > 61
Escherichia coli ECRC62 0.65 BNILDI_08460 rapA RNA polymerase-associated protein RapA 0.46 BNILDI_11735 yfiH purine nucleoside phosphorylase YfiH low > 75
Enterobacter sp. TBS_079 0.65 MPMX20_00753 RNA polymerase-associated protein RapA 0.47 MPMX20_03462 Polyphenol oxidase low > 85
Klebsiella michiganensis M5al 0.65 BWI76_RS04570 RNA polymerase-associated protein RapA 0.47 BWI76_RS21445 hypothetical protein low > 92
Dickeya dianthicola 67-19 0.65 HGI48_RS18170 RNA polymerase-associated protein RapA 0.48 HGI48_RS16230 polyphenol oxidase low > 71
Klebsiella pneumoniae MKP103 0.65 KDGMDA_12795 RNA polymerase-associated protein RapA 0.47 KDGMDA_02135 purine nucleoside phosphorylase YfiH low > 95
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family 0.48 EX28DRAFT_2694 YfiH family protein low > 76
Escherichia coli ECOR38 0.64 HEPCGN_08790 rapA RNA polymerase-associated protein RapA 0.47 HEPCGN_20380 yfiH purine nucleoside phosphorylase YfiH 0.60 54
Escherichia fergusonii Becca 0.64 EFB2_03986 RNA polymerase-associated protein RapA 0.47 EFB2_01297 Polyphenol oxidase low > 86
Dickeya dianthicola ME23 0.64 DZA65_RS19310 RNA polymerase-associated protein RapA 0.49 DZA65_RS17325 polyphenol oxidase low > 75
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS12940 RNA polymerase-associated protein RapA 0.45 PagCFBP13505_RS16535 polyphenol oxidase low > 74
Pantoea sp. MT58 0.64 IAI47_16055 RNA polymerase-associated protein RapA 0.44 IAI47_04430 polyphenol oxidase low > 76
Pectobacterium carotovorum WPP14 0.64 HER17_RS02990 RNA polymerase-associated protein RapA 0.44 HER17_RS05405 polyphenol oxidase low > 75
Erwinia amylovora T8 0.63 OLJFJH_01340 RNA polymerase-associated protein RapA 0.47 OLJFJH_09730 purine nucleoside phosphorylase YfiH low > 58
Erwinia tracheiphila SCR3 0.62 LU632_RS02805 rapA RNA polymerase-associated protein RapA 0.44 LU632_RS16940 pgeF polyphenol oxidase low > 73
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_06075 RNA polymerase-associated protein RapA 0.44 IJEDHG_26865 yfiH purine nucleoside phosphorylase YfiH low > 61
Shewanella sp. ANA-3 0.61 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) 0.42 Shewana3_3170 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.61 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) 0.41 SO3578 conserved hypothetical protein TIGR00726 (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.60 Sama_3131 ATP-dependent helicase HepA (RefSeq) 0.41 Sama_2604 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.60 Shew_0457 ATP-dependent helicase HepA (RefSeq) 0.42 Shew_2949 hypothetical protein (RefSeq) low > 60
Pseudomonas sp. S08-1 0.47 OH686_19955 RNA polymerase associated protein RapA 0.43 OH686_16415 Multicopper polyphenol oxidase low > 80
Pseudomonas sp. RS175 0.46 PFR28_00612 RNA polymerase-associated protein RapA 0.46 PFR28_03747 Polyphenol oxidase low > 88
Pseudomonas sp. DMC3 0.46 GFF2193 RNA polymerase-associated protein RapA 0.43 GFF4005 Polyphenol oxidase low > 89
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_04975 RNA polymerase-associated protein RapA 0.48 AO356_15930 laccase low > 104
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_2845 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.45 Pf6N2E2_5128 COG1496: Uncharacterized conserved protein low > 103
Pseudomonas lactucae CFBP13502 0.46 GEMAOFIL_01492 RNA polymerase-associated protein RapA 0.45 GEMAOFIL_00970 Polyphenol oxidase low > 96
Pseudomonas sp. SVBP6 0.46 COO64_RS17145 rapA RNA polymerase-associated protein RapA 0.46 COO64_RS11060 pgeF peptidoglycan editing factor PgeF low > 93
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit 0.45 Psyr_0727 Protein of unknown function DUF152 low > 86
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_17155 RNA polymerase-associated protein RapA 0.42 AO353_14225 laccase low > 101
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit 0.45 Psyr_0727 Protein of unknown function DUF152 low > 86
Pseudomonas segetis P6 0.46 ACVTMO_RS16290 rapA RNA polymerase-associated protein RapA 0.47 ACVTMO_RS19435 pgeF peptidoglycan editing factor PgeF low > 75
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.44 Pf1N1B4_2823 COG1496: Uncharacterized conserved protein low > 87
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.43 PfGW456L13_1494 COG1496: Uncharacterized conserved protein low > 87
Pseudomonas orientalis W4I3 0.46 QF045_RS09435 RNA polymerase-associated protein RapA 0.45 QF045_RS06810 peptidoglycan editing factor PgeF low > 93
Pseudomonas fluorescens SBW25 0.46 PFLU_RS06675 RNA polymerase-associated protein RapA 0.44 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas stutzeri RCH2 0.46 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family 0.44 Psest_0710 uncharacterized protein, YfiH family — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS06675 RNA polymerase-associated protein RapA 0.44 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas aeruginosa PA14 0.46 IKLFDK_16965 RNA polymerase-associated protein RapA 0.46 IKLFDK_00815 peptidoglycan editing factor PgeF low > 98
Pseudomonas sp. BP01 0.46 JOY50_RS24235 rapA RNA polymerase-associated protein RapA 0.45 JOY50_RS27135 pgeF peptidoglycan editing factor PgeF low > 84
Pseudomonas aeruginosa PUPa3 0.46 DQ20_RS40690 rapA;go_function=ATP RNA polymerase-associated protein RapA 0.46 DQ20_RS56200 pgeF;inference=COORDINATES peptidoglycan editing factor PgeF low > 101
Pseudomonas putida KT2440 0.46 PP_1145 RNA polymerase-associated protein RapA 0.45 PP_0624 Uncharacterized protein YfiH low > 96
Pseudomonas aeruginosa MRSN321 0.46 DY961_RS00330 rapA;go_function=ATP RNA polymerase-associated protein RapA 0.45 DY961_RS23735 pgeF;inference=COORDINATES peptidoglycan editing factor PgeF low > 100
Pseudomonas simiae WCS417 0.45 PS417_06645 RNA polymerase-associated protein RapA 0.45 PS417_03825 laccase low > 88
Alteromonas macleodii MIT1002 0.44 MIT1002_00659 RNA polymerase-associated protein RapA 0.33 MIT1002_02678 Laccase domain protein YfiH low > 70
Marinobacter adhaerens HP15 0.41 HP15_3376 RNA polymerase-associated protein RapA 0.43 HP15_528 multi-copper polyphenol oxidoreductase, laccase low > 73
Acinetobacter baumannii LAC-4 0.38 RR41_RS05200 RNA polymerase-associated protein RapA 0.32 RR41_RS15065 peptidoglycan editing factor PgeF low > 55
Acinetobacter radioresistens SK82 0.37 MPMX26_01027 RNA polymerase-associated protein RapA 0.31 MPMX26_00736 Polyphenol oxidase low > 36
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_09865 rapA RNA polymerase-associated protein RapA 0.33 OKGIIK_01795 pgeF peptidoglycan editing factor PgeF low > 53
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS02885 RNA polymerase-associated protein RapA 0.33 LRK54_RS04960 peptidoglycan editing factor PgeF low > 59
Rhodanobacter denitrificans MT42 0.31 LRK55_RS02635 RNA polymerase-associated protein RapA 0.33 LRK55_RS04740 peptidoglycan editing factor PgeF low > 63
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS07105 RNA polymerase-associated protein RapA 0.35 LRK53_RS05050 peptidoglycan editing factor PgeF — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS09245 RNA polymerase-associated protein RapA 0.32 ABZR86_RS10960 peptidoglycan editing factor PgeF low > 74

Not shown: 0 genomes with orthologs for CSW01_12705 only; 47 genomes with orthologs for CSW01_03700 only