| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_19005 | | amino acid ABC transporter substrate-binding protein | 1.0 | CSW01_03635 | | 3-deoxy-7-phosphoheptulonate synthase | 0.48 | 6 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS28035 | | transporter substrate-binding domain-containing protein | 0.63 | PFLU_RS08380 | | 3-deoxy-7-phosphoheptulonate synthase | 0.18 | 53 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS28035 | | transporter substrate-binding domain-containing protein | 0.63 | PFLU_RS08380 | | 3-deoxy-7-phosphoheptulonate synthase | 0.49 | 84 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_2409 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | 0.63 | Pf1N1B4_289 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.32 | PS417_26385 | | amino acid ABC transporter substrate-binding protein | 0.63 | PS417_08430 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_13745 | | amino acid ABC transporter substrate-binding protein | 0.63 | AO356_03200 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.32 | Pf6N2E2_4670 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | 0.63 | Pf6N2E2_2470 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | low | > 103 |
| Pseudomonas orientalis W4I3 | 0.32 | QF045_RS00770 | | transporter substrate-binding domain-containing protein | 0.63 | QF045_RS11150 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_07865 | | amino acid ABC transporter substrate-binding protein | 0.63 | AO353_19030 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_1075 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | 0.62 | PfGW456L13_2224 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.31 | COO64_RS17605 | | ABC transporter substrate-binding protein | 0.63 | COO64_RS09805 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 93 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_14765 | | ABC-type amino acid transport/signal transduction system, periplasmic component/domain | 0.62 | OH686_01760 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 80 |
| Pseudomonas sp. DMC3 | 0.31 | GFF145 | | hypothetical protein | 0.62 | GFF4623 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive | low | > 89 |
| Pseudomonas sp. RS175 | 0.31 | PFR28_04175 | | hypothetical protein | 0.63 | PFR28_00962 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.30 | GEMAOFIL_05403 | | hypothetical protein | 0.62 | GEMAOFIL_01819 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_0513 | | amino acid ABC transporter substrate-binding protein, PAAT family | 0.63 | Psyr_2073 | | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_0513 | | amino acid ABC transporter substrate-binding protein, PAAT family | 0.63 | Psyr_2073 | | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase | 0.29 | 48 |
| Pseudomonas aeruginosa PA14 | 0.29 | IKLFDK_23165 | | amino acid ABC transporter substrate-binding protein | 0.62 | IKLFDK_08455 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 98 |
| Pseudomonas putida KT2440 | 0.29 | PP_4955 | | conserved exported protein of unknown function | 0.63 | PP_2324 | | tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 96 |
| Pseudomonas aeruginosa MRSN321 | 0.29 | DY961_RS22255 | | transporter substrate-binding domain-containing protein | 0.62 | DY961_RS20425 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.29 | DQ20_RS37065 | | transporter substrate-binding domain-containing protein | 0.62 | DQ20_RS54515 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 101 |
| Pseudomonas sp. BP01 | 0.28 | JOY50_RS09920 | | ABC transporter substrate-binding protein | 0.63 | JOY50_RS25800 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 84 |
| Pseudomonas stutzeri RCH2 | 0.23 | Psest_0342 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | 0.60 | Psest_2331 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 67 |
| Shewanella loihica PV-4 | 0.20 | Shew_3070 | | extracellular solute-binding protein (RefSeq) | 0.66 | Shew_1067 | | phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.19 | SO0056 | | transporter, putative (NCBI ptt file) | 0.68 | SO1361 | aroF | phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.19 | Sama_1011 | | hypothetical protein (RefSeq) | 0.65 | Sama_0893 | | phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.17 | Shewana3_1085 | | hypothetical protein (RefSeq) | 0.68 | Shewana3_3013 | | phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) | low | > 73 |
| Pseudomonas segetis P6 | 0.17 | ACVTMO_RS07105 | | substrate-binding periplasmic protein | 0.62 | ACVTMO_RS13135 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 75 |
| Marinobacter adhaerens HP15 | 0.16 | HP15_2907 | | extracellular solute-binding protein, family 3 | 0.61 | HP15_1814 | | phospho-2-dehydro-3-heoxyheptonate aldolase | low | > 73 |
Not shown: 2 genomes with orthologs for CSW01_19005 only; 34 genomes with orthologs for CSW01_03635 only