Conservation of cofitness between CSW01_03320 and CSW01_03620 in Vibrio cholerae E7946 ATCC 55056

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03320 serine-type D-Ala-D-Ala carboxypeptidase 1.0 CSW01_03620 beta-hexosaminidase 0.52 12
Klebsiella pneumoniae MKP103 0.33 KDGMDA_05980 serine-type D-Ala-D-Ala carboxypeptidase 0.56 KDGMDA_18760 beta-N-acetylhexosaminidase low > 95
Klebsiella michiganensis M5al 0.32 BWI76_RS25165 serine-type D-Ala-D-Ala carboxypeptidase 0.55 BWI76_RS11165 beta-N-acetylhexosaminidase low > 92
Dickeya dianthicola 67-19 0.32 HGI48_RS03180 serine-type D-Ala-D-Ala carboxypeptidase 0.57 HGI48_RS13115 beta-N-acetylhexosaminidase low > 71
Pectobacterium carotovorum WPP14 0.32 HER17_RS18335 serine-type D-Ala-D-Ala carboxypeptidase 0.56 HER17_RS08725 beta-N-acetylhexosaminidase low > 75
Enterobacter sp. TBS_079 0.32 MPMX20_04086 D-alanyl-D-alanine carboxypeptidase DacB 0.56 MPMX20_01788 Beta-hexosaminidase low > 85
Dickeya dianthicola ME23 0.32 DZA65_RS03175 serine-type D-Ala-D-Ala carboxypeptidase 0.57 DZA65_RS13585 beta-N-acetylhexosaminidase low > 75
Enterobacter asburiae PDN3 0.32 EX28DRAFT_3234 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family 0.55 EX28DRAFT_1823 Beta-glucosidase-related glycosidases low > 76
Escherichia coli BW25113 0.32 b3182 dacB D-alanyl-D-alanine carboxypeptidase (NCBI) 0.56 b1107 nagZ beta-hexosaminidase (NCBI) low > 76
Escherichia coli ECOR38 0.32 HEPCGN_16915 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.55 HEPCGN_23980 nagZ beta-N-acetylhexosaminidase low > 88
Escherichia fergusonii Becca 0.32 EFB2_00641 D-alanyl-D-alanine carboxypeptidase DacB 0.55 EFB2_02868 Beta-hexosaminidase low > 86
Escherichia coli ECOR27 0.32 NOLOHH_09840 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.55 NOLOHH_21035 nagZ beta-N-acetylhexosaminidase low > 76
Escherichia coli Nissle 1917 0.32 ECOLIN_RS18325 serine-type D-Ala-D-Ala carboxypeptidase 0.55 ECOLIN_RS06390 beta-N-acetylhexosaminidase low > 55
Dickeya dadantii 3937 0.32 DDA3937_RS03010 serine-type D-Ala-D-Ala carboxypeptidase 0.56 DDA3937_RS13050 beta-N-acetylhexosaminidase low > 74
Escherichia coli BL21 0.32 ECD_03047 D-alanyl-D-alanine carboxypeptidase 0.55 ECD_01103 beta N-acetyl-glucosaminidase low > 61
Escherichia coli ECRC62 0.32 BNILDI_01695 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.55 BNILDI_19195 nagZ beta-N-acetylhexosaminidase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_00518 D-alanyl-D-alanine carboxypeptidase DacB 0.55 OHPLBJKB_02559 Beta-hexosaminidase 0.33 38
Escherichia coli ECRC101 0.32 MCAODC_08560 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.55 MCAODC_22865 nagZ beta-N-acetylhexosaminidase low > 88
Escherichia coli ECRC98 0.32 JDDGAC_21665 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.55 JDDGAC_07165 nagZ beta-N-acetylhexosaminidase low > 87
Escherichia coli ECRC99 0.32 KEDOAH_10110 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.55 KEDOAH_24250 nagZ beta-N-acetylhexosaminidase — —
Escherichia coli ECRC102 0.32 NIAGMN_15800 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.55 NIAGMN_24325 nagZ beta-N-acetylhexosaminidase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF2924 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.54 GFF3390 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 78
Escherichia coli ECRC100 0.32 OKFHMN_18040 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.55 OKFHMN_03505 nagZ beta-N-acetylhexosaminidase low > 79
Pantoea sp. MT58 0.32 IAI47_17085 serine-type D-Ala-D-Ala carboxypeptidase 0.53 IAI47_11995 beta-N-acetylhexosaminidase low > 76
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS09180 serine-type D-Ala-D-Ala carboxypeptidase 0.53 PagCFBP13505_RS05340 beta-N-acetylhexosaminidase low > 74
Erwinia amylovora T8 0.31 OLJFJH_07180 serine-type D-Ala-D-Ala carboxypeptidase 0.54 OLJFJH_15465 beta-N-acetylhexosaminidase low > 58
Erwinia tracheiphila HP pepo 2.2 0.31 IJEDHG_13860 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.54 IJEDHG_00590 nagZ beta-N-acetylhexosaminidase low > 61
Erwinia tracheiphila SCR3 0.31 LU632_RS21170 dacB serine-type D-Ala-D-Ala carboxypeptidase 0.53 LU632_RS14755 nagZ beta-N-acetylhexosaminidase low > 74
Rahnella sp. WP5 0.31 EX31_RS08600 serine-type D-Ala-D-Ala carboxypeptidase 0.50 EX31_RS24500 beta-N-acetylhexosaminidase low > 89
Serratia liquefaciens MT49 0.31 IAI46_01875 serine-type D-Ala-D-Ala carboxypeptidase 0.55 IAI46_09900 beta-N-acetylhexosaminidase 0.61 66
Shewanella oneidensis MR-1 0.24 SO2394 dacB penicillin-binding protein 4 (NCBI ptt file) 0.41 SO2250 nagZ beta-hexosaminidase (NCBI ptt file) low > 76
Pseudomonas fluorescens SBW25-INTG 0.11 PFLU_RS05075 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.39 PFLU_RS07695 beta-N-acetylhexosaminidase low > 109
Pseudomonas fluorescens SBW25 0.11 PFLU_RS05075 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.39 PFLU_RS07695 beta-N-acetylhexosaminidase low > 109
Pseudomonas simiae WCS417 0.11 PS417_05005 penicillin-binding protein 0.40 PS417_07620 beta-hexosaminidase low > 88
Pseudomonas lactucae CFBP13502 0.11 GEMAOFIL_01208 D-alanyl-D-alanine carboxypeptidase DacC 0.40 GEMAOFIL_01656 Beta-hexosaminidase low > 93
Dyella japonica UNC79MFTsu3.2 0.10 ABZR86_RS00485 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.32 ABZR86_RS07110 beta-N-acetylhexosaminidase — —
Sphingomonas koreensis DSMZ 15582 0.09 Ga0059261_1299 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family 0.19 Ga0059261_3481 Beta-glucosidase-related glycosidases low > 68
Pseudomonas segetis P6 0.08 MPMX49_03024 D-alanyl-D-alanine carboxypeptidase DacC 0.40 MPMX49_02985 Beta-hexosaminidase low > 75
Herbaspirillum seropedicae SmR1 0.08 HSERO_RS16870 D-alanyl-D-alanine carboxypeptidase 0.38 HSERO_RS09685 beta-hexosaminidase — —
Sphingobium sp. HT1-2 0.08 GFF4681 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.17 GFF1967 beta-N-acetylglucosaminidase (EC 3.2.1.52) low > 95
Pseudomonas syringae pv. syringae B728a 0.08 Psyr_2111 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 0.39 Psyr_3281 Glycoside hydrolase, family 3, N-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.08 Psyr_2111 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 0.39 Psyr_3281 Glycoside hydrolase, family 3, N-terminal — —
Variovorax sp. SCN45 0.07 GFF5516 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.30 GFF3875 beta-N-acetylglucosaminidase (EC 3.2.1.52) low > 127
Pseudomonas fluorescens FW300-N2E3 0.07 AO353_00765 D-alanyl-D-alanine carboxypeptidase 0.40 AO353_00455 beta-hexosaminidase low > 101
Variovorax sp. OAS795 0.07 ABID97_RS01685 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.32 ABID97_RS08390 beta-N-acetylhexosaminidase low > 91
Pseudomonas sp. BP01 0.07 JOY50_RS22085 dacB D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.39 JOY50_RS25085 nagZ beta-N-acetylhexosaminidase low > 84
Paraburkholderia bryophila 376MFSha3.1 0.07 H281DRAFT_04181 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) 0.35 H281DRAFT_04367 beta-N-acetylhexosaminidase 0.44 56
Pseudomonas fluorescens GW456-L13 0.07 PfGW456L13_4091 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.40 PfGW456L13_4031 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 87
Acidovorax sp. GW101-3H11 0.07 Ac3H11_670 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.33 Ac3H11_1561 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) low > 79

Not shown: 9 genomes with orthologs for CSW01_03320 only; 48 genomes with orthologs for CSW01_03620 only