Conservation of cofitness between CSW01_06870 and CSW01_03485 in Vibrio cholerae E7946 ATCC 55056

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE 1.0 CSW01_03485 branched-chain amino acid transport system II carrier protein 0.39 18
Dickeya dadantii 3937 0.60 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE 0.38 DDA3937_RS05445 branched-chain amino acid transport system II carrier protein low > 74
Shewanella oneidensis MR-1 0.60 SO2501 radical activating enzyme (NCBI ptt file) 0.44 SO0949 brnQ branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.59 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE 0.37 HER17_RS16020 branched-chain amino acid transport system II carrier protein low > 75
Shewanella sp. ANA-3 0.59 Shewana3_2163 radical activating enzyme (RefSeq) 0.45 Shewana3_3332 branched-chain amino acid transport system II carrier protein (RefSeq) low > 73
Rahnella sp. WP5 0.58 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE 0.34 EX31_RS22065 branched-chain amino acid transport system II carrier protein low > 89
Serratia liquefaciens MT49 0.58 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE 0.36 IAI46_04795 branched-chain amino acid transport system II carrier protein low > 86
Erwinia amylovora T8 0.57 OLJFJH_09270 7-carboxy-7-deazaguanine synthase QueE 0.35 OLJFJH_18165 branched-chain amino acid transporter carrier protein BrnQ low > 58
Escherichia coli ECOR27 0.57 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE 0.38 NOLOHH_01465 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 76
Erwinia tracheiphila SCR3 0.57 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE 0.35 LU632_RS18890 brnQ branched-chain amino acid transport system II carrier protein low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF4831 Queuosine Biosynthesis QueE Radical SAM 0.37 GFF4299 Branched-chain amino acid transport system carrier protein low > 78
Escherichia coli ECRC62 0.57 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE 0.38 BNILDI_22880 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 75
Escherichia coli ECRC102 0.57 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE 0.38 NIAGMN_06590 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 80
Escherichia fergusonii Becca 0.57 EFB2_01141 7-carboxy-7-deazaguanine synthase 0.38 EFB2_03656 Branched-chain amino acid transport system 2 carrier protein low > 86
Escherichia coli ECOR38 0.57 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE 0.38 HEPCGN_07175 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 88
Escherichia coli Nissle 1917 0.57 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE 0.38 ECOLIN_RS02420 branched-chain amino acid transporter carrier protein BrnQ low > 55
Escherichia coli ECRC98 0.57 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE 0.38 JDDGAC_12190 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 87
Escherichia coli BL21 0.57 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis 0.38 ECD_00349 branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val low > 61
Escherichia coli ECRC101 0.57 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE 0.38 MCAODC_27760 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 88
Escherichia coli ECRC99 0.57 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE 0.38 KEDOAH_19430 brnQ branched-chain amino acid transporter carrier protein BrnQ — —
Escherichia coli ECRC100 0.57 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.38 OKFHMN_08535 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 79
Escherichia coli BW25113 0.57 b2777 ygcF hypothetical protein (NCBI) 0.38 b0401 brnQ predicted branched chain amino acid transporter (LIV-II) (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase 0.38 OHPLBJKB_03275 Branched-chain amino acid transport system 2 carrier protein low > 74
Shewanella loihica PV-4 0.56 Shew_2061 radical SAM domain-containing protein (RefSeq) 0.49 Shew_0769 branched-chain amino acid transport system II carrier protein (RefSeq) low > 60
Dickeya dianthicola ME23 0.56 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE 0.38 DZA65_RS05830 branched-chain amino acid transport system II carrier protein low > 75
Enterobacter sp. TBS_079 0.56 MPMX20_03645 7-carboxy-7-deazaguanine synthase 0.37 MPMX20_00988 Branched-chain amino acid transport system 2 carrier protein low > 85
Dickeya dianthicola 67-19 0.56 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE 0.38 HGI48_RS05505 branched-chain amino acid transport system II carrier protein low > 71
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 0.37 EX28DRAFT_2573 branched-chain amino acid uptake carrier low > 76
Pantoea sp. MT58 0.56 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE 0.36 IAI47_14835 branched-chain amino acid transporter carrier protein BrnQ low > 76
Klebsiella michiganensis M5al 0.56 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE 0.37 BWI76_RS06240 branched-chain amino acid transport system 2 carrier protein BrnQ low > 92
Klebsiella pneumoniae MKP103 0.56 KDGMDA_03310 7-carboxy-7-deazaguanine synthase QueE 0.37 KDGMDA_14315 branched-chain amino acid transporter carrier protein BrnQ low > 95
Pantoea agglomerans CFBP13505 P0401 0.55 PagCFBP13505_RS16825 7-carboxy-7-deazaguanine synthase QueE 0.36 PagCFBP13505_RS10315 branched-chain amino acid transporter carrier protein BrnQ low > 74
Shewanella amazonensis SB2B 0.55 Sama_1825 radical activating enzyme (RefSeq) 0.50 Sama_2740 branched-chain amino acid transport system II carrier protein BrnQ (RefSeq) low > 62
Cellulophaga baltica 18 0.20 M666_RS00760 7-carboxy-7-deazaguanine synthase QueE 0.17 M666_RS05680 branched-chain amino acid transport system II carrier protein low > 67
Pseudomonas sp. RS175 0.14 PFR28_03404 7-carboxy-7-deazaguanine synthase 0.39 PFR28_03091 Branched-chain amino acid transport system 2 carrier protein low > 88
Pseudomonas sp. DMC3 0.14 GFF5176 7-carboxy-7-deazaguanine synthase 0.38 GFF2525 Branched-chain amino acid transport system 2 carrier protein low > 89
Pseudomonas lactucae CFBP13502 0.13 GEMAOFIL_04633 7-carboxy-7-deazaguanine synthase 0.35 GEMAOFIL_01914 Branched-chain amino acid transport system 2 carrier protein low > 93
Pseudomonas simiae WCS417 0.13 PS417_22405 7-carboxy-7-deazaguanine synthase 0.35 PS417_08920 branched-chain amino acid ABC transporter substrate-binding protein low > 88
Pseudomonas fluorescens SBW25 0.13 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.37 PFLU_RS08980 branched-chain amino acid transport system II carrier protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.13 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.37 PFLU_RS08980 branched-chain amino acid transport system II carrier protein 0.28 57
Pseudomonas fluorescens FW300-N2C3 0.13 AO356_18065 7-carboxy-7-deazaguanine synthase 0.39 AO356_19720 branched-chain amino acid ABC transporter substrate-binding protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.13 Pf6N2E2_5545 Queuosine Biosynthesis QueE Radical SAM 0.39 Pf6N2E2_5860 Branched-chain amino acid transport system carrier protein low > 103
Pseudomonas sp. S08-1 0.12 OH686_19175 7-carboxy-7-deazaguanine synthase 0.38 OH686_01945 branched-chain amino acid transport system II carrier protein low > 80
Pseudomonas putida KT2440 0.12 PP_1225 7-carboxy-7-deazaguanine synthase 0.36 PP_4184 branched chain amino acid transporter 0.18 63
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_1861 Queuosine Biosynthesis QueE Radical SAM 0.39 PfGW456L13_4264 Branched-chain amino acid transport system carrier protein low > 87
Pseudomonas aeruginosa PA14 0.12 IKLFDK_04415 7-carboxy-7-deazaguanine synthase QueE 0.42 IKLFDK_07615 branched-chain amino acid transport system II carrier protein low > 100
Pseudomonas sp. BP01 0.12 JOY50_RS01775 queE 7-carboxy-7-deazaguanine synthase QueE 0.36 JOY50_RS19100 brnQ branched-chain amino acid transport system II carrier protein low > 84
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_629 Queuosine Biosynthesis QueE Radical SAM 0.37 Pf1N1B4_3686 Branched-chain amino acid transport system carrier protein low > 87
Pseudomonas segetis P6 0.12 MPMX49_01693 7-carboxy-7-deazaguanine synthase 0.41 MPMX49_02702 Branched-chain amino acid transport system 2 carrier protein low > 75

Not shown: 47 genomes with orthologs for CSW01_06870 only; 9 genomes with orthologs for CSW01_03485 only