Conservation of cofitness between CSW01_03145 and CSW01_03335 in Vibrio cholerae E7946 ATCC 55056

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03145 polynucleotide adenylyltransferase PcnB 1.0 CSW01_03335 ribosome assembly RNA-binding protein YhbY 0.55 8
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3732 poly(A) polymerase 0.80 EX28DRAFT_3231 putative RNA-binding protein, YhbY family 0.58 72
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.82 GFF2921 FIG004454: RNA binding protein low > 78
Dickeya dianthicola ME23 0.57 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.80 DZA65_RS03185 ribosome assembly RNA-binding protein YhbY low > 75
Enterobacter sp. TBS_079 0.56 MPMX20_00829 Poly(A) polymerase I 0.80 MPMX20_04084 RNA-binding protein YhbY low > 85
Dickeya dadantii 3937 0.56 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.80 DDA3937_RS03020 ribosome assembly RNA-binding protein YhbY low > 74
Klebsiella michiganensis M5al 0.56 BWI76_RS05005 polynucleotide adenylyltransferase 0.80 BWI76_RS25155 RNA-binding protein — —
Dickeya dianthicola 67-19 0.56 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.80 HGI48_RS03190 ribosome assembly RNA-binding protein YhbY low > 71
Escherichia fergusonii Becca 0.56 EFB2_03901 Poly(A) polymerase I 0.81 EFB2_00643 RNA-binding protein YhbY low > 86
Serratia liquefaciens MT49 0.56 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.80 IAI46_01885 ribosome assembly RNA-binding protein YhbY low > 86
Escherichia coli ECOR38 0.56 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.81 HEPCGN_16925 yhbY ribosome assembly RNA-binding protein YhbY low > 88
Escherichia coli ECRC99 0.56 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.81 KEDOAH_10100 yhbY ribosome assembly RNA-binding protein YhbY — —
Escherichia coli ECRC101 0.56 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.81 MCAODC_08570 yhbY ribosome assembly RNA-binding protein YhbY low > 88
Escherichia coli BW25113 0.56 b0143 pcnB poly(A) polymerase I (VIMSS) 0.81 b3180 yhbY predicted RNA-binding protein (NCBI) 0.25 56
Escherichia coli ECRC100 0.56 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.81 OKFHMN_18050 yhbY ribosome assembly RNA-binding protein YhbY low > 79
Escherichia coli BL21 0.56 ECD_00142 poly(A) polymerase 0.81 ECD_03045 RNA binding protein low > 61
Escherichia coli Nissle 1917 0.56 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.81 ECOLIN_RS18315 ribosome assembly RNA-binding protein YhbY low > 55
Escherichia coli ECRC102 0.56 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.81 NIAGMN_15810 yhbY ribosome assembly RNA-binding protein YhbY low > 80
Escherichia coli ECRC98 0.56 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.81 JDDGAC_21675 yhbY ribosome assembly RNA-binding protein YhbY low > 87
Escherichia coli ECRC62 0.56 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.81 BNILDI_01685 yhbY ribosome assembly RNA-binding protein YhbY low > 75
Escherichia coli ECOR27 0.56 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.81 NOLOHH_09850 yhbY ribosome assembly RNA-binding protein YhbY low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_03519 Poly(A) polymerase I 0.81 OHPLBJKB_00520 RNA-binding protein YhbY low > 74
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS13355 polynucleotide adenylyltransferase PcnB 0.82 PagCFBP13505_RS09170 ribosome assembly RNA-binding protein YhbY low > 74
Klebsiella pneumoniae MKP103 0.56 KDGMDA_13260 polynucleotide adenylyltransferase PcnB 0.80 KDGMDA_05970 ribosome assembly RNA-binding protein YhbY low > 95
Pantoea sp. MT58 0.56 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.81 IAI47_17075 ribosome assembly RNA-binding protein YhbY low > 76
Pectobacterium carotovorum WPP14 0.54 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.78 HER17_RS18325 ribosome assembly RNA-binding protein YhbY — —
Erwinia amylovora T8 0.54 OLJFJH_00775 polynucleotide adenylyltransferase PcnB 0.77 OLJFJH_07190 ribosome assembly RNA-binding protein YhbY low > 58
Erwinia tracheiphila SCR3 0.53 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.76 LU632_RS21115 yhbY ribosome assembly RNA-binding protein YhbY low > 74
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_15050 Poly(A) polymerase I 0.77 IJEDHG_13870 yhbY ribosome assembly RNA-binding protein YhbY — —
Alteromonas macleodii MIT1002 0.52 MIT1002_03692 Poly(A) polymerase I precursor 0.69 MIT1002_01863 RNA-binding protein low > 70
Shewanella oneidensis MR-1 0.52 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.76 SO1195 conserved hypothetical protein TIGR00253 (NCBI ptt file) — —
Shewanella loihica PV-4 0.52 Shew_3131 poly(A) polymerase (RefSeq) 0.76 Shew_2836 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.52 Shewana3_3406 poly(A) polymerase (RefSeq) 0.76 Shewana3_1021 hypothetical protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.50 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.78 Sama_0952 RNA-binding protein (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0058 poly(A) polymerase 0.58 B158DRAFT_0633 putative RNA-binding protein, YhbY family low > 40
Pseudomonas sp. SVBP6 0.46 COO64_RS15095 polynucleotide adenylyltransferase PcnB 0.45 COO64_RS15225 yhbY ribosome assembly RNA-binding protein YhbY low > 93
Pseudomonas sp. DMC3 0.45 GFF4029 Poly(A) polymerase I 0.39 GFF4980 RNA-binding protein low > 89
Pseudomonas putida KT2440 0.45 PP_4697 poly(A) polymerase 0.44 PP_4720 putative RNA binding protein low > 96
Pseudomonas sp. BP01 0.45 JOY50_RS27670 polynucleotide adenylyltransferase PcnB 0.44 JOY50_RS26780 YhbY family RNA-binding protein low > 84
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0830 Poly(A) polymerase 0.41 Psyr_4189 Protein of unknown function UPF0044 low > 86
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0830 Poly(A) polymerase 0.41 Psyr_4189 Protein of unknown function UPF0044 — —
Pseudomonas lactucae CFBP13502 0.45 GEMAOFIL_04931 Poly(A) polymerase I 0.42 GEMAOFIL_04955 RNA-binding protein — —
Pseudomonas simiae WCS417 0.45 PS417_23900 poly(A) polymerase 0.42 PS417_24025 RNA-binding protein — —
Pseudomonas segetis P6 0.45 MPMX49_01223 Poly(A) polymerase I 0.43 MPMX49_01190 RNA-binding protein 0.46 22
Pseudomonas sp. RS175 0.45 PFR28_03719 Poly(A) polymerase I 0.40 PFR28_00080 RNA-binding protein YhbY — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.42 PFLU_RS25865 YhbY family RNA-binding protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_14395 poly(A) polymerase 0.41 AO353_05615 RNA-binding protein — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.42 PFLU_RS25865 YhbY family RNA-binding protein low > 109
Pseudomonas sp. S08-1 0.44 OH686_17255 Poly(A) polymerase 0.45 OH686_17095 RNA-binding protein YhbY low > 80
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.40 PfGW456L13_5096 FIG004454: RNA binding protein low > 87
Marinobacter adhaerens HP15 0.44 HP15_326 polyA polymerase 0.48 HP15_3075 RNA-binding, CRM domain, prokaryote low > 73
Pseudomonas aeruginosa PA14 0.44 IKLFDK_29965 polynucleotide adenylyltransferase PcnB 0.42 IKLFDK_29830 ribosome assembly RNA-binding protein YhbY low > 100
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.41 Pf6N2E2_3361 FIG004454: RNA binding protein — —
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_16070 poly(A) polymerase 0.40 AO356_07465 RNA-binding protein — —
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.41 Pf1N1B4_1169 FIG004454: RNA binding protein — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.51 ABZR86_RS06570 ribosome assembly RNA-binding protein YhbY low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.49 ABIE51_RS06515 ribosome assembly RNA-binding protein YhbY low > 62
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.45 OKGIIK_08090 yhbY ribosome assembly RNA-binding protein YhbY — —
Rhodanobacter sp000427505 FW510-R12 0.42 LRK53_RS13510 polynucleotide adenylyltransferase PcnB 0.47 LRK53_RS12245 ribosome assembly RNA-binding protein YhbY low > 59
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.45 LRK54_RS16675 ribosome assembly RNA-binding protein YhbY low > 59
Rhodanobacter denitrificans MT42 0.42 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.45 LRK55_RS16400 ribosome assembly RNA-binding protein YhbY low > 63
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.46 Xcc-8004.3126.1 FIG004454: RNA binding protein — —
Pseudomonas stutzeri RCH2 0.41 Psest_0998 poly(A) polymerase 0.40 Psest_0971 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein — —
Methylophilus sp. DMC18 0.37 GFF2604 Poly(A) polymerase I 0.50 GFF315 RNA-binding protein low > 43
Acinetobacter baumannii LAC-4 0.28 RR41_RS16060 polynucleotide adenylyltransferase PcnB 0.46 RR41_RS04175 ribosome assembly RNA-binding protein YhbY low > 55

Not shown: 13 genomes with orthologs for CSW01_03145 only; 4 genomes with orthologs for CSW01_03335 only