Conservation of cofitness between CSW01_04975 and CSW01_03330 in Vibrio cholerae E7946 ATCC 55056

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04975 transcriptional regulator 1.0 CSW01_03330 transcription elongation factor GreA 0.47 17
Erwinia amylovora T8 0.56 OLJFJH_17700 Cu(I)-responsive transcriptional regulator 0.63 OLJFJH_07185 transcription elongation factor GreA low > 58
Enterobacter sp. TBS_079 0.56 MPMX20_01085 HTH-type transcriptional regulator CueR 0.66 MPMX20_04085 Transcription elongation factor GreA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4405 HTH-type transcriptional regulator cueR 0.67 GFF2922 Transcription elongation factor GreA low > 78
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2473 Cu(I)-responsive transcriptional regulator 0.66 EX28DRAFT_3232 transcription elongation factor GreA low > 76
Escherichia coli ECRC99 0.54 KEDOAH_19935 cueR Cu(I)-responsive transcriptional regulator 0.68 KEDOAH_10105 greA transcription elongation factor GreA — —
Escherichia coli ECRC100 0.54 OKFHMN_08035 cueR Cu(I)-responsive transcriptional regulator 0.68 OKFHMN_18045 greA transcription elongation factor GreA low > 79
Escherichia coli ECRC102 0.54 NIAGMN_06085 cueR Cu(I)-responsive transcriptional regulator 0.68 NIAGMN_15805 greA transcription elongation factor GreA low > 80
Escherichia coli ECOR38 0.54 HEPCGN_06670 cueR Cu(I)-responsive transcriptional regulator 0.68 HEPCGN_16920 greA transcription elongation factor GreA low > 88
Klebsiella michiganensis M5al 0.54 BWI76_RS06910 transcriptional regulator 0.66 BWI76_RS25160 transcription elongation factor GreA low > 92
Escherichia coli ECRC101 0.54 MCAODC_27250 cueR Cu(I)-responsive transcriptional regulator 0.68 MCAODC_08565 greA transcription elongation factor GreA low > 87
Escherichia coli ECRC98 0.54 JDDGAC_11680 cueR Cu(I)-responsive transcriptional regulator 0.68 JDDGAC_21670 greA transcription elongation factor GreA low > 87
Escherichia coli BW25113 0.54 b0487 cueR DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) 0.68 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) low > 76
Escherichia coli BL21 0.54 ECD_00438 copper-responsive regulon transcriptional regulator 0.68 ECD_03046 transcript cleavage factor low > 61
Escherichia coli ECOR27 0.54 NOLOHH_01000 cueR Cu(I)-responsive transcriptional regulator 0.68 NOLOHH_09845 greA transcription elongation factor GreA low > 76
Escherichia coli ECRC62 0.54 BNILDI_22420 cueR Cu(I)-responsive transcriptional regulator 0.68 BNILDI_01690 greA transcription elongation factor GreA low > 75
Rahnella sp. WP5 0.54 EX31_RS22580 Cu(I)-responsive transcriptional regulator 0.64 EX31_RS08595 transcription elongation factor GreA low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_03187 HTH-type transcriptional regulator CueR 0.68 OHPLBJKB_00519 Transcription elongation factor GreA low > 74
Escherichia fergusonii Becca 0.53 EFB2_03572 HTH-type transcriptional regulator CueR 0.68 EFB2_00642 Transcription elongation factor GreA low > 86
Escherichia coli Nissle 1917 0.53 ECOLIN_RS02880 Cu(I)-responsive transcriptional regulator 0.68 ECOLIN_RS18320 transcription elongation factor GreA — —
Klebsiella pneumoniae MKP103 0.53 KDGMDA_14950 Cu(I)-responsive transcriptional regulator 0.67 KDGMDA_05975 transcription elongation factor GreA low > 95
Pantoea sp. MT58 0.51 IAI47_14395 Cu(I)-responsive transcriptional regulator 0.64 IAI47_17080 transcription elongation factor GreA low > 76
Serratia liquefaciens MT49 0.51 IAI46_05315 Cu(I)-responsive transcriptional regulator 0.63 IAI46_01880 transcription elongation factor GreA low > 87
Dickeya dianthicola ME23 0.50 DZA65_RS06230 Cu(I)-responsive transcriptional regulator 0.65 DZA65_RS03180 transcription elongation factor GreA low > 75
Pectobacterium carotovorum WPP14 0.50 HER17_RS15620 Cu(I)-responsive transcriptional regulator 0.65 HER17_RS18330 transcription elongation factor GreA — —
Dickeya dadantii 3937 0.50 DDA3937_RS05850 Cu(I)-responsive transcriptional regulator 0.66 DDA3937_RS03015 transcription elongation factor GreA — —
Dickeya dianthicola 67-19 0.50 HGI48_RS05895 Cu(I)-responsive transcriptional regulator 0.65 HGI48_RS03185 transcription elongation factor GreA low > 71
Pantoea agglomerans CFBP13505 P0401 0.50 PagCFBP13505_RS10805 Cu(I)-responsive transcriptional regulator 0.64 PagCFBP13505_RS09175 transcription elongation factor GreA low > 74
Erwinia tracheiphila SCR3 0.47 LU632_RS15290 cueR Cu(I)-responsive transcriptional regulator 0.58 LU632_RS21165 greA transcription elongation factor GreA low > 73
Erwinia tracheiphila HP pepo 2.2 0.47 IJEDHG_01065 cueR Cu(I)-responsive transcriptional regulator 0.58 IJEDHG_13865 greA transcription elongation factor GreA low > 61
Pseudomonas sp. SVBP6 0.41 COO64_RS26335 cueR Cu(I)-responsive transcriptional regulator 0.55 COO64_RS15235 greA transcription elongation factor GreA low > 93
Pseudomonas stutzeri RCH2 0.40 Psest_0737 Cu(I)-responsive transcriptional regulator 0.61 Psest_0969 transcription elongation factor GreA low > 67
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0653 transcriptional regulator, MerR family 0.56 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0653 transcriptional regulator, MerR family 0.56 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas putida KT2440 0.39 PP_0585 putative metal-sensitive transcriptional regulator, MerR family 0.56 PP_4722 Transcription elongation factor GreA low > 96
Pseudomonas aeruginosa PUPa3 0.39 DQ20_RS52395 cueR;go_function=DNA-binding Cu(I)-responsive transcriptional regulator 0.65 DQ20_RS52505 greA;go_function=DNA transcription elongation factor GreA low > 101
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_08070 transcriptional regulator 0.58 AO356_07475 transcription elongation factor GreA — —
Dinoroseobacter shibae DFL-12 0.39 Dshi_4066 transcriptional regulator, MerR family (RefSeq) 0.55 Dshi_3076 transcription elongation factor GreA (RefSeq) — —
Pseudomonas aeruginosa PA14 0.39 IKLFDK_29700 Cu(I)-responsive transcriptional regulator 0.65 IKLFDK_29820 transcription elongation factor GreA — —
Pseudomonas aeruginosa MRSN321 0.39 DY961_RS09650 cueR;go_function=DNA-binding Cu(I)-responsive transcriptional regulator 0.65 DY961_RS09530 greA;go_function=DNA transcription elongation factor GreA low > 100
Pseudomonas sp. BP01 0.39 JOY50_RS23260 cueR Cu(I)-responsive transcriptional regulator 0.57 JOY50_RS26770 greA transcription elongation factor GreA low > 84
Pseudomonas simiae WCS417 0.39 PS417_03155 transcriptional regulator 0.56 PS417_24035 transcription elongation factor GreA — —
Pseudomonas sp. S08-1 0.39 OH686_07400 Cu(I)-responsive transcriptional regulator 0.58 OH686_17085 Transcription elongation factor GreA low > 80
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3488 Cu(I)-responsive transcriptional regulator 0.58 Pf6N2E2_3363 Transcription elongation factor GreA — —
Pseudomonas orientalis W4I3 0.38 QF045_RS06190 Cu(I)-responsive transcriptional regulator 0.55 QF045_RS26290 transcription elongation factor GreA low > 93
Pseudomonas sp. RS175 0.38 PFR28_05243 HTH-type transcriptional regulator HmrR 0.59 PFR28_00078 Transcription elongation factor GreA — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_25 Cu(I)-responsive transcriptional regulator 0.56 PfGW456L13_5098 Transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_06160 transcriptional regulator 0.56 AO353_05625 transcription elongation factor GreA low > 101
Pseudomonas sp. DMC3 0.38 GFF3355 HTH-type transcriptional regulator HmrR 0.55 GFF4978 Transcription elongation factor GreA low > 89
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1263 Cu(I)-responsive transcriptional regulator 0.56 Pf1N1B4_1171 Transcription elongation factor GreA — —
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_00846 HTH-type transcriptional regulator HmrR 0.55 GEMAOFIL_04957 Transcription elongation factor GreA low > 96
Pseudomonas fluorescens SBW25 0.37 PFLU_RS03235 Cu(I)-responsive transcriptional regulator 0.55 PFLU_RS25875 transcription elongation factor GreA low > 109
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS03235 Cu(I)-responsive transcriptional regulator 0.55 PFLU_RS25875 transcription elongation factor GreA low > 109
Dechlorosoma suillum PS 0.36 Dsui_1064 Cu(I)-responsive transcriptional regulator 0.50 Dsui_3063 transcription elongation factor GreA low > 51
Sinorhizobium meliloti 1021 0.36 SM_b21579 MerR family transcriptional regulator 0.51 SMc01218 transcription elongation factor GreA — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS23915 Cu(I)-responsive transcriptional regulator 0.52 QEN71_RS04785 transcription elongation factor GreA low > 153
Phaeobacter inhibens DSM 17395 0.36 PGA1_c02530 HTH-type transcriptional regulator 0.53 PGA1_c03290 transcription elongation factor GreA low > 62
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_04982 transcriptional regulator, MerR family 0.52 H281DRAFT_04404 GreA/GreB family elongation factor low > 103
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS06865 MerR family transcriptional regulator 0.53 BPHYT_RS14185 transcription elongation factor GreA low > 109
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS08015 MerR family transcriptional regulator 0.50 HSERO_RS06930 transcription elongation factor GreA — —
Pseudomonas segetis P6 0.34 ACVTMO_RS05495 cueR Cu(I)-responsive transcriptional regulator 0.58 ACVTMO_RS05890 greA transcription elongation factor GreA low > 75
Magnetospirillum magneticum AMB-1 0.34 AMB_RS09150 Cu(I)-responsive transcriptional regulator 0.49 AMB_RS03610 transcription elongation factor GreA low > 64
Rhodopseudomonas palustris CGA009 0.33 TX73_016860 helix-turn-helix domain-containing protein 0.49 TX73_021095 transcription elongation factor GreA — —
Azospirillum sp. SherDot2 0.33 MPMX19_06429 HTH-type transcriptional regulator HmrR 0.52 MPMX19_02300 Transcription elongation factor GreA low > 112
Bosea sp. OAE506 0.32 ABIE41_RS15580 Cu(I)-responsive transcriptional regulator 0.50 ABIE41_RS11905 transcription elongation factor GreA — —
Shewanella sp. ANA-3 0.32 Shewana3_2762 MerR family transcriptional regulator (RefSeq) 0.71 Shewana3_1017 transcription elongation factor GreA (RefSeq) — —
Shewanella amazonensis SB2B 0.32 Sama_1785 MerR family transcriptional regulator (RefSeq) 0.69 Sama_0951 GreA/GreB family elongation factor (RefSeq) low > 62
Methylophilus sp. DMC18 0.32 GFF1813 HTH-type transcriptional regulator HmrR 0.53 GFF313 Transcription elongation factor GreA low > 43
Shewanella oneidensis MR-1 0.32 SO1687 transcriptional regulator, MerR family (NCBI ptt file) 0.71 SO1191 greA transcription elongation factor GreA (NCBI ptt file) low > 76
Azospirillum brasilense Sp245 0.32 AZOBR_RS27570 MerR family transcriptional regulator 0.50 AZOBR_RS12900 transcription elongation factor GreA — —
Sphingobium sp. HT1-2 0.32 GFF3389 Heavy metal resistance transcriptional regulator HmrR 0.47 GFF2086 Transcription elongation factor GreA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS11645 helix-turn-helix domain-containing protein 0.55 A4249_RS00695 transcription elongation factor GreA — —
Marinobacter adhaerens HP15 0.31 HP15_89 transcriptional regulator, MerR family protein 0.58 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain low > 73
Agrobacterium fabrum C58 0.30 Atu0938 transcriptional regulator, MerR family 0.52 Atu2182 transcription elongation facto — —
Variovorax sp. OAS795 0.29 ABID97_RS02815 Cu(I)-responsive transcriptional regulator 0.47 ABID97_RS17070 transcription elongation factor GreA low > 91
Xanthobacter sp. DMC5 0.29 GFF2151 hypothetical protein 0.49 GFF4682 Transcription elongation factor GreA — —
Variovorax sp. SCN45 0.28 GFF3315 Cu(I)-responsive transcriptional regulator 0.48 GFF374 Transcription elongation factor GreA low > 127

Not shown: 1 genomes with orthologs for CSW01_04975 only; 40 genomes with orthologs for CSW01_03330 only