Conservation of cofitness between CSW01_09315 and CSW01_02875 in Vibrio cholerae E7946 ATCC 55056

119 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09315 exodeoxyribonuclease III 1.0 CSW01_02875 DNA recombination/repair protein RecA 0.47 17
Shewanella loihica PV-4 0.78 Shew_2262 exonuclease III (RefSeq) 0.80 Shew_1215 recA recombinase A (RefSeq) — —
Shewanella oneidensis MR-1 0.76 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) 0.81 SO3430 recA recA protein (NCBI ptt file) 0.25 37
Shewanella sp. ANA-3 0.75 Shewana3_1503 exonuclease III (RefSeq) 0.81 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.71 MIT1002_01652 Exodeoxyribonuclease III 0.77 MIT1002_00955 Recombinase A low > 70
Pectobacterium carotovorum WPP14 0.69 HER17_RS11085 exodeoxyribonuclease III 0.83 HER17_RS05045 recombinase RecA low > 75
Enterobacter asburiae PDN3 0.68 EX28DRAFT_1753 exodeoxyribonuclease III 0.81 EX28DRAFT_2785 protein RecA — —
Pseudomonas aeruginosa MRSN321 0.68 DY961_RS04905 xthA;go_function=DNA exodeoxyribonuclease III 0.73 DY961_RS14895 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA low > 100
Pseudomonas aeruginosa PUPa3 0.68 DQ20_RS35805 xthA;go_function=DNA exodeoxyribonuclease III 0.73 DQ20_RS42235 recA;go_component=cytoplasm|0005737||IEA;go_function=DNA recombinase RecA low > 101
Pseudomonas aeruginosa PA14 0.67 IKLFDK_12510 exodeoxyribonuclease III 0.73 IKLFDK_18465 recombinase RecA low > 98
Enterobacter sp. TBS_079 0.67 MPMX20_01864 Exodeoxyribonuclease III 0.81 MPMX20_03580 Protein RecA low > 85
Klebsiella michiganensis M5al 0.67 BWI76_RS11665 exodeoxyribonuclease III 0.80 BWI76_RS22180 recombinase RecA — —
Pseudomonas simiae WCS417 0.67 PS417_16980 exonuclease III 0.72 PS417_05815 recombinase RecA low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_2476 Exodeoxyribonuclease III 0.72 Psyr_1378 RecA protein low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_2476 Exodeoxyribonuclease III 0.72 Psyr_1378 RecA protein low > 86
Escherichia fergusonii Becca 0.67 EFB2_02244 Exodeoxyribonuclease III 0.80 EFB2_01225 Protein RecA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.81 GFF4693 RecA protein — —
Escherichia coli ECRC62 0.67 BNILDI_16200 xthA exodeoxyribonuclease III 0.80 BNILDI_11105 recA recombinase RecA low > 75
Escherichia coli ECOR27 0.67 NOLOHH_17415 xthA exodeoxyribonuclease III 0.80 NOLOHH_12545 recA recombinase RecA low > 76
Escherichia coli BW25113 0.67 b1749 xthA exonuclease III (NCBI) 0.80 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli ECRC100 0.67 OKFHMN_26900 xthA exodeoxyribonuclease III 0.80 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01983 Exodeoxyribonuclease III 0.80 OHPLBJKB_01035 Protein RecA low > 74
Escherichia coli ECRC101 0.67 MCAODC_18510 xthA exodeoxyribonuclease III 0.80 MCAODC_11230 recA recombinase RecA low > 87
Escherichia coli BL21 0.67 ECD_01718 exonuclease III 0.80 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor — —
Escherichia coli ECRC99 0.67 KEDOAH_01210 xthA exodeoxyribonuclease III 0.80 KEDOAH_07430 recA recombinase RecA — —
Escherichia coli ECRC98 0.67 JDDGAC_01475 xthA exodeoxyribonuclease III 0.80 JDDGAC_24370 recA recombinase RecA — —
Escherichia coli ECRC102 0.67 NIAGMN_01165 xthA exodeoxyribonuclease III 0.80 NIAGMN_18475 recA recombinase RecA — —
Pseudomonas segetis P6 0.67 ACVTMO_RS11835 xthA exodeoxyribonuclease III 0.73 ACVTMO_RS16500 recA recombinase RecA low > 75
Escherichia coli Nissle 1917 0.66 ECOLIN_RS09750 exodeoxyribonuclease III 0.80 ECOLIN_RS15060 recombinase RecA — —
Pseudomonas sp. RS175 0.66 PFR28_02754 Exodeoxyribonuclease III 0.73 PFR28_00472 Protein RecA low > 88
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_2599 Exodeoxyribonuclease III (EC 3.1.11.2) 0.73 PfGW456L13_4668 RecA protein low > 87
Klebsiella pneumoniae MKP103 0.66 KDGMDA_19345 exodeoxyribonuclease III 0.81 KDGMDA_02850 recombinase RecA low > 95
Escherichia coli ECOR38 0.66 HEPCGN_05265 xthA exodeoxyribonuclease III 0.80 HEPCGN_19900 recA recombinase RecA low > 88
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_3995 Exodeoxyribonuclease III (EC 3.1.11.2) 0.73 Pf1N1B4_3143 RecA protein — —
Erwinia amylovora T8 0.66 OLJFJH_13265 exodeoxyribonuclease III 0.80 OLJFJH_09575 recombinase RecA low > 58
Pseudomonas orientalis W4I3 0.66 QF045_RS18655 exodeoxyribonuclease III 0.72 QF045_RS08730 recombinase RecA low > 93
Pseudomonas sp. S08-1 0.66 OH686_00905 exodeoxyribonuclease III 0.73 OH686_18205 protein RecA low > 80
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_01060 exonuclease III 0.73 AO356_05670 recombinase RecA low > 104
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS18930 exodeoxyribonuclease III 0.72 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25 0.66 PFLU_RS18930 exodeoxyribonuclease III 0.72 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas lactucae CFBP13502 0.66 GEMAOFIL_03704 Exodeoxyribonuclease III 0.73 GEMAOFIL_01333 Protein RecA low > 96
Pseudomonas sp. SVBP6 0.66 COO64_RS24405 xthA exodeoxyribonuclease III 0.73 COO64_RS19930 recA recombinase RecA — —
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_142 Exodeoxyribonuclease III (EC 3.1.11.2) 0.73 Pf6N2E2_2993 RecA protein — —
Pseudomonas sp. DMC3 0.66 GFF1481 Exodeoxyribonuclease III 0.73 GFF2111 Protein RecA low > 89
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_27875 exonuclease III 0.73 AO353_16805 recombinase RecA low > 101
Pantoea agglomerans CFBP13505 P0401 0.66 PagCFBP13505_RS02825 exodeoxyribonuclease III 0.81 PagCFBP13505_RS16670 recombinase RecA low > 74
Rahnella sp. WP5 0.65 EX31_RS06330 exodeoxyribonuclease III 0.82 EX31_RS07800 recombinase RecA low > 89
Pseudomonas stutzeri RCH2 0.65 Psest_2130 exodeoxyribonuclease III 0.72 Psest_2872 protein RecA low > 67
Pantoea sp. MT58 0.65 IAI47_08990 exodeoxyribonuclease III 0.80 IAI47_04300 recombinase RecA low > 76
Dickeya dadantii 3937 0.65 DDA3937_RS10310 exodeoxyribonuclease III 0.82 DDA3937_RS16245 recombinase RecA low > 74
Pseudomonas sp. BP01 0.65 JOY50_RS05870 xthA exodeoxyribonuclease III 0.72 JOY50_RS23780 recA recombinase RecA low > 84
Serratia liquefaciens MT49 0.65 IAI46_14290 exodeoxyribonuclease III 0.80 IAI46_03840 recombinase RecA low > 87
Dickeya dianthicola 67-19 0.65 HGI48_RS10320 exodeoxyribonuclease III 0.82 HGI48_RS16355 recombinase RecA low > 71
Pseudomonas putida KT2440 0.64 PP_2890 exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI 0.72 PP_1629 Protein RecA low > 96
Dickeya dianthicola ME23 0.64 DZA65_RS10795 exodeoxyribonuclease III 0.82 DZA65_RS17450 recombinase RecA — —
Erwinia tracheiphila SCR3 0.63 LU632_RS12950 xthA exodeoxyribonuclease III 0.81 LU632_RS15735 recA recombinase RecA — —
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_22660 xthA exodeoxyribonuclease III 0.81 IJEDHG_01625 recA recombinase RecA — —
Shewanella amazonensis SB2B 0.63 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.80 Sama_1046 recA recombinase A (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_1291 exodeoxyribonuclease III 0.72 B158DRAFT_1531 protein RecA 0.56 15
Marinobacter adhaerens HP15 0.58 HP15_1776 exonuclease III 0.71 HP15_1048 recombinase A low > 73
Dechlorosoma suillum PS 0.31 Dsui_0044 exodeoxyribonuclease III 0.66 Dsui_0707 protein RecA 0.57 7
Rhodopseudomonas palustris CGA009 0.31 TX73_014820 exodeoxyribonuclease III 0.66 TX73_019940 recombinase RecA — —
Lysobacter sp. OAE881 0.31 ABIE51_RS01755 exodeoxyribonuclease III 0.69 ABIE51_RS07800 recombinase RecA low > 62
Castellaniella sp019104865 MT123 0.30 ABCV34_RS03115 exodeoxyribonuclease III 0.67 ABCV34_RS04460 recombinase RecA 0.48 20
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS13495 exodeoxyribonuclease III 0.63 ABZR87_RS07965 recombinase RecA 0.52 30
Rhizobium sp. OAE497 0.30 ABIE40_RS08420 exodeoxyribonuclease III 0.67 ABIE40_RS10320 recombinase RecA low > 107
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS01700 exodeoxyribonuclease III 0.63 RALBFv3_RS12010 recombinase RecA 0.31 25
Ralstonia solanacearum PSI07 0.29 RPSI07_RS15785 exodeoxyribonuclease III 0.64 RPSI07_RS21260 recombinase RecA low > 81
Ralstonia solanacearum GMI1000 0.29 RS_RS08025 exodeoxyribonuclease III 0.63 RS_RS02760 DNA recombination/repair protein RecA — —
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS15630 exodeoxyribonuclease III 0.65 HSERO_RS03270 protein RecA 0.60 5
Sinorhizobium meliloti 1021 0.29 SMc02077 exodeoxyribonuclease III protein 0.66 SMc00760 recombinase A 0.53 5
Ralstonia solanacearum UW163 0.29 UW163_RS15010 exodeoxyribonuclease III 0.63 UW163_RS01625 recombinase RecA — —
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS14930 exodeoxyribonuclease III 0.68 ABZR86_RS00660 recombinase RecA 0.44 24
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) 0.67 Xcc-8004.3111.1 RecA protein — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c11070 exodeoxyribonuclease III 0.65 PGA1_c15260 protein recA (recombinase A) low > 62
Dinoroseobacter shibae DFL-12 0.29 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) 0.60 Dshi_1643 recA protein (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.28 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) 0.63 Ac3H11_1255 RecA protein — —
Rhodanobacter sp000427505 FW510-R12 0.28 LRK53_RS02400 exodeoxyribonuclease III 0.71 LRK53_RS13640 recombinase RecA — —
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS09020 exodeoxyribonuclease III 0.66 QEN71_RS02335 recombinase RecA — —
Xanthobacter sp. DMC5 0.28 GFF2821 Exodeoxyribonuclease III 0.65 GFF1169 Protein RecA — —
Methylophilus sp. DMC18 0.28 GFF1517 Exodeoxyribonuclease III 0.67 GFF841 Protein RecA low > 43
Paraburkholderia graminis OAS925 0.28 ABIE53_002802 exodeoxyribonuclease-3 0.66 ABIE53_003448 recombination protein RecA low > 113
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS07325 exodeoxyribonuclease III 0.63 RR42_RS03080 recombinase RecA 0.51 30
Bosea sp. OAE506 0.28 ABIE41_RS06625 exodeoxyribonuclease III 0.63 ABIE41_RS13335 recombinase RecA low > 77
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS12925 exodeoxyribonuclease III 0.66 BPHYT_RS16360 recombinase RecA — —
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_00456 Exodeoxyribonuclease III 0.66 H281DRAFT_04208 RecA protein low > 103
Agrobacterium fabrum C58 0.28 Atu1714 exonuclease III 0.66 Atu1874 RecA protein low > 89
Variovorax sp. OAS795 0.27 ABID97_RS09955 exodeoxyribonuclease III 0.64 ABID97_RS02275 recombinase RecA 0.51 68
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) 0.62 GFF2500 RecA protein 0.81 1
Rhodospirillum rubrum S1H 0.27 Rru_A1784 exodeoxyribonuclease III xth (NCBI) 0.66 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Sphingobium sp. HT1-2 0.27 GFF2556 Exodeoxyribonuclease III (EC 3.1.11.2) 0.67 GFF3120 RecA protein low > 95
Variovorax sp. SCN45 0.27 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) 0.64 GFF5390 RecA protein low > 127
Magnetospirillum magneticum AMB-1 0.27 AMB_RS12755 exodeoxyribonuclease III 0.65 AMB_RS03205 DNA recombination/repair protein RecA low > 64
Synechocystis sp000284455 PCC 6803 0.27 SGL_RS12355 exodeoxyribonuclease III 0.59 SGL_RS18280 recombinase RecA — —
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_15390 xth exodeoxyribonuclease III 0.71 OKGIIK_03740 recA recombinase RecA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS05240 exodeoxyribonuclease III 0.64 A4249_RS12615 recombinase RecA low > 48
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS08625 exodeoxyribonuclease III 0.71 LRK54_RS14980 recombinase RecA 0.58 19
Rhodanobacter denitrificans MT42 0.26 LRK55_RS08390 exodeoxyribonuclease III 0.71 LRK55_RS14695 recombinase RecA low > 63
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS19760 exodeoxyribonuclease III 0.57 ABZR88_RS16740 recombinase RecA low > 71
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_3499 exodeoxyribonuclease III 0.66 Ga0059261_0204 protein RecA low > 68
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_02090 exodeoxyribonuclease III 0.60 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.26 CCNA_02090 exodeoxyribonuclease III 0.60 CCNA_01141 RecA protein low > 66
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_2607 xthA Exodeoxyribonuclease III 0.56 Synpcc7942_0348 recA recombinase A — —
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS16605 exodeoxyribonuclease III 0.55 HMPREF1181_RS11910 recombinase RecA low > 56
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS00480 exodeoxyribonuclease III 0.55 HMPREF1078_RS00095 recombinase RecA low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_17265 exodeoxyribonuclease III 0.60 CA264_19695 DNA recombination/repair protein RecA — —
Azospirillum brasilense Sp245 0.24 AZOBR_RS15540 exodeoxyribonuclease III 0.66 AZOBR_RS11095 recombinase RecA 0.66 15
Azospirillum sp. SherDot2 0.24 MPMX19_04331 Exodeoxyribonuclease 0.66 MPMX19_00869 Protein RecA — —
Bacteroides thetaiotaomicron VPI-5482 0.23 BT0630 exodeoxyribonuclease (NCBI ptt file) 0.55 BT4610 RecA (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.23 BACOVA_02252 exodeoxyribonuclease III 0.55 BACOVA_05402 RecA protein 0.44 82
Cellulophaga baltica 18 0.23 M666_RS03605 exodeoxyribonuclease III 0.59 M666_RS05260 recombinase RecA low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.22 Echvi_1056 exodeoxyribonuclease III 0.56 Echvi_0044 protein RecA low > 79
Fusobacterium nucleatum SB010 0.20 HUW76_10435 exodeoxyribonuclease III 0.52 HUW76_07355 recombinase RecA low > 35
Phocaeicola dorei CL03T12C01 0.19 ABI39_RS13020 exodeoxyribonuclease III 0.57 ABI39_RS11930 recombinase RecA low > 72
Desulfovibrio vulgaris Hildenborough JW710 0.18 DVU3259 xth exodeoxyribonuclease III (TIGR) 0.55 DVU1090 recA recA protein (TIGR) low > 55
Phocaeicola vulgatus CL09T03C04 0.18 HMPREF1058_RS17100 exodeoxyribonuclease III 0.56 HMPREF1058_RS15965 recombinase RecA low > 67
Desulfovibrio vulgaris Miyazaki F 0.18 DvMF_2456 exodeoxyribonuclease III (RefSeq) 0.55 DvMF_0876 recA recombinase A (RefSeq) low > 51
Bifidobacterium breve UCC2003 0.18 BBR_RS16630 exodeoxyribonuclease III 0.61 BBR_RS16530 recombinase RecA low > 34
Acinetobacter radioresistens SK82 0.16 MPMX26_02938 Exodeoxyribonuclease 0.71 MPMX26_01308 Protein RecA low > 36
Acinetobacter baumannii LAC-4 0.15 RR41_RS00795 exodeoxyribonuclease III 0.71 RR41_RS08110 recombinase RecA — —

Not shown: 3 genomes with orthologs for CSW01_09315 only; 1 genomes with orthologs for CSW01_02875 only