| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12240 | | single-stranded-DNA-specific exonuclease RecJ | 1.0 | CSW01_02220 | | metalloprotease TldD | 0.62 | 12 |
| Pantoea sp. MT58 | 0.64 | IAI47_03830 | | single-stranded-DNA-specific exonuclease RecJ | 0.69 | IAI47_02465 | | metalloprotease TldD | low | > 76 |
| Escherichia coli ECRC62 | 0.64 | BNILDI_10035 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.67 | BNILDI_01980 | tldD | metalloprotease TldD | low | > 75 |
| Escherichia coli BL21 | 0.64 | ECD_02724 | | ssDNA exonuclease, 5 | 0.67 | ECD_03104 | | putative peptidase | low | > 61 |
| Pantoea agglomerans CFBP13505 P0401 | 0.64 | PagCFBP13505_RS15870 | | single-stranded-DNA-specific exonuclease RecJ | 0.69 | PagCFBP13505_RS11060 | | metalloprotease TldD | low | > 74 |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_11505 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.67 | NOLOHH_09555 | tldD | metalloprotease TldD | low | > 76 |
| Escherichia coli ECRC100 | 0.64 | OKFHMN_19580 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.67 | OKFHMN_17755 | tldD | metalloprotease TldD | low | > 79 |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_17345 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.67 | NIAGMN_15515 | tldD | metalloprotease TldD | low | > 80 |
| Serratia liquefaciens MT49 | 0.64 | IAI46_20720 | | single-stranded-DNA-specific exonuclease RecJ | 0.68 | IAI46_22685 | | metalloprotease TldD | low | > 87 |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_23220 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.67 | JDDGAC_21380 | tldD | metalloprotease TldD | low | > 87 |
| Escherichia coli ECRC101 | 0.64 | MCAODC_10100 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.67 | MCAODC_08275 | tldD | metalloprotease TldD | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_00823 | | Single-stranded-DNA-specific exonuclease RecJ | 0.67 | OHPLBJKB_00460 | | Metalloprotease TldD | low | > 74 |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_08560 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.67 | KEDOAH_10395 | tldD | metalloprotease TldD | — | — |
| Escherichia fergusonii Becca | 0.64 | EFB2_01009 | | Single-stranded-DNA-specific exonuclease RecJ | 0.67 | EFB2_00586 | | Metalloprotease TldD | low | > 86 |
| Dickeya dadantii 3937 | 0.63 | DDA3937_RS03310 | | single-stranded-DNA-specific exonuclease RecJ | 0.69 | DDA3937_RS01460 | | metalloprotease TldD | low | > 74 |
| Escherichia coli BW25113 | 0.63 | b2892 | recJ | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | 0.67 | b3244 | tldD | predicted peptidase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.63 | HEPCGN_18870 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.67 | HEPCGN_16620 | tldD | metalloprotease TldD | low | > 88 |
| Dickeya dianthicola 67-19 | 0.63 | HGI48_RS03450 | | single-stranded-DNA-specific exonuclease RecJ | 0.69 | HGI48_RS01380 | | metalloprotease TldD | low | > 71 |
| Dickeya dianthicola ME23 | 0.63 | DZA65_RS03495 | | single-stranded-DNA-specific exonuclease RecJ | 0.69 | DZA65_RS01440 | | metalloprotease TldD | low | > 75 |
| Escherichia coli Nissle 1917 | 0.63 | ECOLIN_RS16115 | | single-stranded-DNA-specific exonuclease RecJ | 0.67 | ECOLIN_RS18595 | | metalloprotease TldD | low | > 55 |
| Enterobacter asburiae PDN3 | 0.63 | EX28DRAFT_2943 | | single-stranded-DNA-specific exonuclease RecJ | 0.67 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.63 | KDGMDA_04290 | | single-stranded-DNA-specific exonuclease RecJ | 0.67 | KDGMDA_06245 | | metalloprotease TldD | low | > 95 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.62 | GFF2989 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.66 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 78 |
| Erwinia amylovora T8 | 0.62 | OLJFJH_08845 | | single-stranded-DNA-specific exonuclease RecJ | 0.68 | OLJFJH_06940 | | metalloprotease TldD | low | > 58 |
| Rahnella sp. WP5 | 0.62 | EX31_RS13470 | | single-stranded-DNA-specific exonuclease RecJ | 0.66 | EX31_RS12265 | | metalloprotease TldD | low | > 89 |
| Enterobacter sp. TBS_079 | 0.62 | MPMX20_03751 | | Single-stranded-DNA-specific exonuclease RecJ | 0.68 | MPMX20_04151 | | Metalloprotease TldD | low | > 85 |
| Erwinia tracheiphila HP pepo 2.2 | 0.62 | IJEDHG_03185 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.66 | IJEDHG_13595 | tldD | metalloprotease TldD | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS05985 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.66 | LU632_RS21420 | tldD | metalloprotease TldD | low | > 73 |
| Klebsiella michiganensis M5al | 0.61 | BWI76_RS23805 | | ssDNA exonuclease RecJ | 0.65 | BWI76_RS25470 | | metalloprotease TldD | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.60 | HER17_RS17880 | | single-stranded-DNA-specific exonuclease RecJ | 0.66 | HER17_RS20140 | | metalloprotease TldD | low | > 75 |
| Shewanella loihica PV-4 | 0.60 | Shew_0772 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.63 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.59 | Sama_2737 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.61 | Sama_0474 | | TldD protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.58 | Shewana3_3329 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.64 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.58 | SO0952 | recJ | single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) | 0.62 | SO4091 | tldD | tldD protein (NCBI ptt file) | low | > 76 |
| Pseudomonas sp. S08-1 | 0.58 | OH686_06955 | | single-stranded-DNA-specific exonuclease RecJ | 0.61 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.58 | Psyr_1298 | | exonuclease RecJ | 0.60 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.58 | Psyr_1298 | | exonuclease RecJ | 0.60 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | low | > 86 |
| Pseudomonas simiae WCS417 | 0.57 | PS417_22855 | | ssDNA exonuclease RecJ | 0.60 | PS417_04285 | | protease TldD | 0.31 | 64 |
| Pseudomonas putida KT2440 | 0.57 | PP_1477 | | ssDNA-specific exonuclease RecJ | 0.62 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS24515 | | single-stranded-DNA-specific exonuclease RecJ | 0.60 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS24515 | | single-stranded-DNA-specific exonuclease RecJ | 0.60 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Pseudomonas segetis P6 | 0.57 | ACVTMO_RS07905 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.62 | ACVTMO_RS19155 | tldD | metalloprotease TldD | low | > 75 |
| Pseudomonas sp. BP01 | 0.57 | JOY50_RS11745 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.62 | JOY50_RS11070 | tldD | metalloprotease TldD | low | > 84 |
| Pseudomonas orientalis W4I3 | 0.57 | QF045_RS25045 | | single-stranded-DNA-specific exonuclease RecJ | 0.60 | QF045_RS07275 | | metalloprotease TldD | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.57 | IKLFDK_19015 | | single-stranded-DNA-specific exonuclease RecJ | 0.64 | IKLFDK_01710 | | metalloprotease TldD | low | > 98 |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_06345 | | single-stranded-DNA-specific exonuclease RecJ | 0.60 | AO356_07095 | | protease TldD | low | > 104 |
| Pseudomonas aeruginosa PUPa3 | 0.57 | DQ20_RS42775 | recJ;go_function=single-stranded | single-stranded-DNA-specific exonuclease RecJ | 0.63 | DQ20_RS56565 | tldD;go_function=metallopeptidase | metalloprotease TldD | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.57 | DY961_RS14350 | recJ;go_function=single-stranded | single-stranded-DNA-specific exonuclease RecJ | 0.63 | DY961_RS24105 | tldD;go_function=metallopeptidase | metalloprotease TldD | low | > 100 |
| Pseudomonas fluorescens FW300-N2E2 | 0.57 | Pf6N2E2_3137 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.60 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 103 |
| Pseudomonas sp. SVBP6 | 0.57 | COO64_RS04980 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.62 | COO64_RS04225 | tldD | metalloprotease TldD | low | > 93 |
| Pseudomonas sp. DMC3 | 0.56 | GFF1996 | | Single-stranded-DNA-specific exonuclease RecJ | 0.60 | GFF1816 | | Metalloprotease TldD | low | > 89 |
| Pseudomonas sp. RS175 | 0.56 | PFR28_00339 | | Single-stranded-DNA-specific exonuclease RecJ | 0.59 | PFR28_00161 | | Metalloprotease TldD | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.56 | Pf1N1B4_3020 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.60 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.56 | PfGW456L13_1730 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.60 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas lactucae CFBP13502 | 0.56 | GEMAOFIL_04722 | | Single-stranded-DNA-specific exonuclease RecJ | 0.60 | GEMAOFIL_01062 | | Metalloprotease TldD | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_04320 | | single-stranded-DNA-specific exonuclease RecJ | 0.61 | AO353_05215 | | protease TldD | 0.24 | 96 |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_1544 | | single-stranded-DNA-specific exonuclease RecJ | 0.59 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 67 |
| Alteromonas macleodii MIT1002 | 0.52 | MIT1002_00788 | | Single-stranded-DNA-specific exonuclease RecJ | 0.66 | MIT1002_00227 | | protease TldD | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.48 | B158DRAFT_2268 | | single-stranded-DNA-specific exonuclease RecJ | 0.58 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 40 |
| Dechlorosoma suillum PS | 0.44 | Dsui_2860 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | Dsui_3401 | | putative Zn-dependent protease-like protein | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.2909.1 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.56 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.43 | ABZR86_RS02800 | | single-stranded-DNA-specific exonuclease RecJ | 0.58 | ABZR86_RS21715 | | metalloprotease TldD | low | > 74 |
| Methylophilus sp. DMC18 | 0.43 | GFF889 | | Single-stranded-DNA-specific exonuclease RecJ | 0.60 | GFF380 | | Metalloprotease TldD | low | > 43 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS18620 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | RPSI07_RS11850 | | metalloprotease TldD | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS05550 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | RS_RS13315 | | metalloprotease TldD | 0.27 | 64 |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS14740 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | RALBFv3_RS05455 | | metalloprotease TldD | low | > 76 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS12210 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | UW163_RS08170 | | metalloprotease TldD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS06090 | | single-stranded DNA exonuclease | 0.55 | RR42_RS05875 | | protease TldD | low | > 128 |
| Rhodanobacter denitrificans FW104-10B01 | 0.42 | LRK54_RS00315 | | single-stranded-DNA-specific exonuclease RecJ | 0.57 | LRK54_RS03395 | | metalloprotease TldD | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_06995 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.58 | OKGIIK_10280 | tldD | metalloprotease TldD | low | > 53 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS10395 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | ABZR87_RS01105 | | metalloprotease TldD | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.41 | HSERO_RS13965 | | single-stranded DNA exonuclease | 0.53 | HSERO_RS07155 | | peptidase C69 | 0.31 | 39 |
| Variovorax sp. OAS795 | 0.40 | ABID97_RS22940 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | ABID97_RS06335 | | metalloprotease TldD | 0.31 | 87 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS05835 | | single-stranded-DNA-specific exonuclease RecJ | 0.54 | QEN71_RS26555 | | metalloprotease TldD | low | > 153 |
| Variovorax sp. SCN45 | 0.40 | GFF6700 | | Single-stranded-DNA-specific exonuclease RecJ | 0.55 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_1746 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.56 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.40 | LRK53_RS09835 | | DHHA1 domain-containing protein | 0.58 | LRK53_RS06565 | | metalloprotease TldD | low | > 59 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_00488 | | exonuclease RecJ | 0.54 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.39 | ABIE53_002771 | | single-stranded-DNA-specific exonuclease | 0.54 | ABIE53_000851 | | TldD protein | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS12730 | | single-stranded DNA exonuclease | 0.55 | BPHYT_RS03540 | | peptidase C69 | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS05005 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | ABCV34_RS02590 | | metalloprotease TldD | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF739 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.56 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Parabacteroides merdae CL09T00C40 | 0.24 | HMPREF1078_RS07725 | | single-stranded-DNA-specific exonuclease RecJ | 0.35 | HMPREF1078_RS03620 | | TldD/PmbA family protein | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.24 | CA264_17545 | | single-stranded-DNA-specific exonuclease RecJ | 0.09 | CA264_16655 | | TldD protein | low | > 74 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.24 | BT3939 | | single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) | 0.35 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | — | — |
| Bacteroides stercoris CC31F | 0.23 | HMPREF1181_RS06545 | | single-stranded-DNA-specific exonuclease RecJ | 0.33 | HMPREF1181_RS03165 | | TldD/PmbA family protein | low | > 56 |
| Rhodospirillum rubrum S1H | 0.23 | Rru_A2408 | | RecJ exonuclease (NCBI) | 0.49 | Rru_A0567 | | Peptidase U62, modulator of DNA gyrase (NCBI) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_3089 | | single-stranded-DNA-specific exonuclease RecJ | 0.47 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | — | — |
| Magnetospirillum magneticum AMB-1 | 0.22 | AMB_RS18875 | | single-stranded-DNA-specific exonuclease RecJ | 0.48 | AMB_RS21030 | | metalloprotease TldD | — | — |
| Rhodopseudomonas palustris CGA009 | 0.21 | TX73_012960 | | single-stranded-DNA-specific exonuclease RecJ | 0.47 | TX73_004255 | | metalloprotease TldD | — | — |
| Phaeobacter inhibens DSM 17395 | 0.21 | PGA1_c08630 | | single-stranded-DNA-specific exonuclease RecJ | 0.43 | PGA1_c06240 | | protein TldD | — | — |
| Agrobacterium fabrum C58 | 0.21 | Atu1586 | | single-stranded-DNA-specific exonuclease | 0.50 | Atu0765 | | TldD | — | — |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_2275 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.44 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.21 | ABIE40_RS08655 | | single-stranded-DNA-specific exonuclease RecJ | 0.51 | ABIE40_RS04050 | | metalloprotease TldD | — | — |
| Azospirillum sp. SherDot2 | 0.20 | MPMX19_00667 | | Single-stranded-DNA-specific exonuclease RecJ | 0.49 | MPMX19_00882 | | Metalloprotease TldD | — | — |
| Rhodanobacter denitrificans MT42 | 0.19 | LRK55_RS18310 | | DHHA1 domain-containing protein | 0.57 | LRK55_RS03145 | | metalloprotease TldD | low | > 63 |
| Sinorhizobium meliloti 1021 | 0.18 | SMc00292 | | single-stranded-DNA-specific exonuclease | 0.49 | SMc00960 | | hypothetical protein | — | — |
Not shown: 14 genomes with orthologs for CSW01_12240 only; 11 genomes with orthologs for CSW01_02220 only