Conservation of cofitness between CSW01_07545 and CSW01_01875 in Vibrio cholerae E7946 ATCC 55056

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 CSW01_01875 hypothetical protein 0.71 16
Escherichia coli ECRC101 0.55 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 MCAODC_07830 yheO Uncharacterized protein YheO low > 88
Escherichia coli ECRC99 0.54 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 KEDOAH_10840 yheO Uncharacterized protein YheO — —
Escherichia coli ECRC100 0.54 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 OKFHMN_17300 yheO Uncharacterized protein YheO — —
Escherichia coli ECRC102 0.54 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 NIAGMN_15070 yheO Uncharacterized protein YheO — —
Escherichia coli ECRC98 0.54 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 JDDGAC_20930 yheO Uncharacterized protein YheO low > 87
Escherichia coli ECOR38 0.54 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 HEPCGN_16130 yheO Uncharacterized protein YheO low > 88
Escherichia coli ECRC62 0.54 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 BNILDI_02420 yheO Uncharacterized protein YheO low > 75
Escherichia coli ECOR27 0.54 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 NOLOHH_09100 yheO Uncharacterized protein YheO — —
Escherichia coli BL21 0.54 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.64 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 ECOLIN_RS19165 transcriptional regulator — —
Escherichia coli BW25113 0.54 b1835 yebU putative nucleolar proteins (VIMSS) 0.64 b3346 yheO orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.64 OHPLBJKB_00357 Transcriptional regulator DauR low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.64 GFF3726 YheO-like PAS domain low > 78
Escherichia fergusonii Becca 0.54 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.64 EFB2_00477 Transcriptional regulator DauR low > 86
Pantoea sp. MT58 0.53 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 IAI47_02055 transcriptional regulator low > 76
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 PagCFBP13505_RS21525 transcriptional regulator low > 74
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.64 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.52 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.64 MPMX20_04239 Transcriptional regulator DauR low > 85
Serratia liquefaciens MT49 0.52 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.66 IAI46_23490 transcriptional regulator low > 86
Dickeya dadantii 3937 0.51 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.66 DDA3937_RS19340 transcriptional regulator low > 74
Pectobacterium carotovorum WPP14 0.51 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 HER17_RS02010 transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.66 HGI48_RS19440 transcriptional regulator low > 71
Klebsiella michiganensis M5al 0.51 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 BWI76_RS25905 hypothetical protein low > 92
Erwinia amylovora T8 0.51 OLJFJH_12985 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.66 OLJFJH_03930 Uncharacterized protein YheO low > 58
Dickeya dianthicola ME23 0.51 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.66 DZA65_RS20560 transcriptional regulator low > 75
Klebsiella pneumoniae MKP103 0.50 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 KDGMDA_06760 Uncharacterized protein YheO low > 95
Rahnella sp. WP5 0.50 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.66 EX31_RS04470 transcriptional regulator low > 89
Shewanella sp. ANA-3 0.50 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.35 Shewana3_2973 YheO domain-containing protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.35 SO1402 conserved hypothetical protein (NCBI ptt file) low > 76

Not shown: 13 genomes with orthologs for CSW01_07545 only; 35 genomes with orthologs for CSW01_01875 only