| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12735 | | RidA family protein | 1.0 | CSW01_01485 | | transcriptional regulator | 0.90 | 6 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.81 | OHPLBJKB_03791 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | OHPLBJKB_00264 | | HTH-type transcriptional regulator GntR | low | > 74 |
| Escherichia coli ECRC100 | 0.81 | OKFHMN_11875 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | OKFHMN_16835 | gntR | gluconate operon transcriptional repressor GntR | low | > 79 |
| Escherichia coli ECOR27 | 0.81 | NOLOHH_04135 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.51 | NOLOHH_08635 | gntR | gluconate operon transcriptional repressor GntR | low | > 76 |
| Escherichia coli Nissle 1917 | 0.81 | ECOLIN_RS24615 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | ECOLIN_RS19675 | | gluconate operon transcriptional repressor GntR | low | > 55 |
| Escherichia coli ECRC101 | 0.81 | MCAODC_02380 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | MCAODC_07365 | gntR | gluconate operon transcriptional repressor GntR | low | > 87 |
| Escherichia coli BW25113 | 0.81 | b4243 | yjgF | orf, hypothetical protein (VIMSS) | 0.52 | b3438 | gntR | DNA-binding transcriptional repressor (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.81 | BNILDI_07375 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | BNILDI_02870 | gntR | gluconate operon transcriptional repressor GntR | low | > 75 |
| Escherichia coli ECRC99 | 0.81 | KEDOAH_16280 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | KEDOAH_11305 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Escherichia coli ECRC98 | 0.81 | JDDGAC_15515 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | JDDGAC_20465 | gntR | gluconate operon transcriptional repressor GntR | low | > 87 |
| Escherichia coli ECRC102 | 0.81 | NIAGMN_09725 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | NIAGMN_14605 | gntR | gluconate operon transcriptional repressor GntR | low | > 80 |
| Escherichia coli ECOR38 | 0.81 | HEPCGN_10070 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | HEPCGN_15660 | gntR | gluconate operon transcriptional repressor GntR | low | > 88 |
| Escherichia fergusonii Becca | 0.81 | EFB2_04290 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | EFB2_00382 | | HTH-type transcriptional regulator GntR | low | > 86 |
| Escherichia coli BL21 | 0.81 | ECD_04111 | | enamine/imine deaminase, reaction intermediate detoxification | 0.51 | ECD_03289 | | d-gluconate inducible gluconate regulon transcriptional repressor | low | > 61 |
| Enterobacter sp. TBS_079 | 0.79 | MPMX20_00542 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | MPMX20_04319 | | HTH-type transcriptional regulator GntR | 0.40 | 19 |
| Pantoea sp. MT58 | 0.78 | IAI47_16870 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | IAI47_01650 | | gluconate operon transcriptional repressor GntR | low | > 76 |
| Klebsiella michiganensis M5al | 0.78 | BWI76_RS02985 | | reactive intermediate/imine deaminase | 0.51 | BWI76_RS26245 | | transcriptional regulator | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.78 | KDGMDA_11455 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.51 | KDGMDA_07120 | | gluconate operon transcriptional repressor GntR | low | > 95 |
| Enterobacter asburiae PDN3 | 0.77 | EX28DRAFT_3444 | | reactive intermediate/imine deaminase | 0.51 | EX28DRAFT_4274 | | transcriptional regulator, LacI family | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.77 | PagCFBP13505_RS08965 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.50 | PagCFBP13505_RS18155 | | gluconate operon transcriptional repressor GntR | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.76 | GFF928 | | Endoribonuclease L-PSP | 0.49 | GFF570 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 78 |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS01960 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.55 | DZA65_RS20970 | | gluconate operon transcriptional repressor GntR | low | > 75 |
| Dickeya dianthicola 67-19 | 0.74 | HGI48_RS01890 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.55 | HGI48_RS19900 | | gluconate operon transcriptional repressor GntR | — | — |
| Dickeya dadantii 3937 | 0.74 | DDA3937_RS01915 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.55 | DDA3937_RS19785 | | gluconate operon transcriptional repressor GntR | low | > 74 |
| Rahnella sp. WP5 | 0.74 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.54 | EX31_RS05060 | | gluconate operon transcriptional repressor GntR | low | > 89 |
| Erwinia amylovora T8 | 0.74 | OLJFJH_07320 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.56 | OLJFJH_04280 | | gluconate operon transcriptional repressor GntR | low | > 58 |
| Erwinia tracheiphila HP pepo 2.2 | 0.73 | IJEDHG_14050 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.54 | IJEDHG_08040 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Erwinia tracheiphila SCR3 | 0.73 | LU632_RS20960 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.53 | LU632_RS19160 | gntR | gluconate operon transcriptional repressor GntR | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS19520 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.52 | HER17_RS01450 | | gluconate operon transcriptional repressor GntR | low | > 75 |
| Serratia liquefaciens MT49 | 0.69 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.54 | IAI46_23965 | | gluconate operon transcriptional repressor GntR | low | > 87 |
| Azospirillum brasilense Sp245 | 0.44 | AZOBR_RS32435 | | dfrA | 0.31 | AZOBR_RS15720 | | LacI family transcription regulator | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.44 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.34 | Pf6N2E2_2865 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.43 | AO356_12475 | | reactive intermediate/imine deaminase | 0.34 | AO356_05065 | | LacI family transcriptional regulator | low | > 104 |
| Pseudomonas sp. DMC3 | 0.43 | GFF420 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.33 | GFF5268 | | HTH-type transcriptional regulator GntR | low | > 89 |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_2112 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.35 | Pf1N1B4_558 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.43 | COO64_RS01560 | | RidA family protein | 0.34 | COO64_RS25590 | | LacI family DNA-binding transcriptional regulator | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.43 | IKLFDK_26760 | | reactive intermediate/imine deaminase | 0.36 | IKLFDK_11375 | | LacI family DNA-binding transcriptional regulator GntR | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.43 | DQ20_RS49540 | | RidA family protein | 0.36 | DQ20_RS59230 | gntR;inference=COORDINATES | LacI family DNA-binding transcriptional regulator GntR | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.43 | PfGW456L13_779 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.34 | PfGW456L13_1925 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.43 | AO353_09285 | | reactive intermediate/imine deaminase | 0.33 | AO353_03255 | | LacI family transcriptional regulator | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.43 | DY961_RS12585 | | RidA family protein | 0.36 | DY961_RS17990 | gntR;inference=COORDINATES | LacI family DNA-binding transcriptional regulator GntR | low | > 100 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_04425 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.34 | PFR28_00593 | | HTH-type transcriptional regulator GntR | low | > 88 |
| Pseudomonas putida KT2440 | 0.42 | PP_5303 | | aminoacrylate/iminopropionate hydrolase/deaminase | 0.31 | PP_3415 | | Transcriptional regulator, LacI family | low | > 96 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_0208 | | endoribonuclease L-PSP | 0.32 | Psyr_3336 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_27835 | | endoribonuclease | 0.33 | PS417_21990 | | LacI family transcriptional regulator | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.42 | GEMAOFIL_00035 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.34 | GEMAOFIL_04536 | | HTH-type transcriptional regulator GntR | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_0208 | | endoribonuclease L-PSP | 0.32 | Psyr_3336 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas orientalis W4I3 | 0.42 | QF045_RS02190 | | RidA family protein | 0.34 | QF045_RS24095 | | LacI family DNA-binding transcriptional regulator | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS29515 | | RidA family protein | 0.34 | PFLU_RS23595 | | LacI family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS29515 | | RidA family protein | 0.34 | PFLU_RS23595 | | LacI family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas sp. BP01 | 0.42 | JOY50_RS08980 | | RidA family protein | 0.31 | JOY50_RS23605 | | LacI family DNA-binding transcriptional regulator | low | > 84 |
| Pseudomonas segetis P6 | 0.42 | ACVTMO_RS00185 | | RidA family protein | 0.33 | ACVTMO_RS11810 | gntR | HTH-type transcriptional regulator GntR | low | > 75 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3818 | | endoribonuclease L-PSP, putative | 0.34 | Psest_2126 | | Transcriptional regulators | low | > 67 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS41190 | | RidA family protein | 0.29 | QEN71_RS13585 | | LacI family DNA-binding transcriptional regulator | — | — |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS03565 | | Rid family detoxifying hydrolase | 0.26 | ABCV34_RS12285 | | LacI family DNA-binding transcriptional regulator | — | — |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_00109 | | Putative reactive intermediate deaminase TdcF | 0.31 | MIT1002_03475 | | Gluconate utilization system GNT-I transcriptional repressor | low | > 70 |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS20925 | | endoribonuclease L-PSP | 0.24 | RALBFv3_RS16125 | | GntR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS22060 | | endoribonuclease L-PSP | 0.24 | UW163_RS16860 | | GntR family transcriptional regulator | — | — |
| Variovorax sp. SCN45 | 0.31 | GFF6707 | | RidA/YER057c/UK114 superfamily protein | 0.30 | GFF7257 | | KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor | low | > 127 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS22895 | | RidA family protein | 0.29 | ABID97_RS01205 | | LacI family DNA-binding transcriptional regulator | low | > 91 |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_0720 | | Endoribonuclease L-PSP (RefSeq) | 0.27 | Dshi_3322 | | transcriptional regulator, LacI family (RefSeq) | low | > 64 |
| Ralstonia solanacearum GMI1000 | 0.29 | RS_RS23660 | | RidA family protein | 0.26 | RS_RS24865 | | LacI family DNA-binding transcriptional regulator | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.29 | RR42_RS30085 | | hypothetical protein | 0.26 | RR42_RS22645 | | GntR family transcriptional regulator | low | > 128 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.27 | GFF3622 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.30 | GFF5509 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 90 |
| Azospirillum sp. SherDot2 | 0.26 | MPMX19_04018 | | 2-aminomuconate deaminase | 0.29 | MPMX19_05332 | | HTH-type transcriptional regulator GntR | low | > 112 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.25 | H281DRAFT_03549 | | reactive intermediate/imine deaminase | 0.30 | H281DRAFT_05920 | | transcriptional regulator, LacI family | low | > 103 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS21405 | | RidA family protein | 0.25 | ABIE40_RS04445 | | LacI family DNA-binding transcriptional regulator | low | > 107 |
| Agrobacterium fabrum C58 | 0.24 | Atu3926 | | translation initiation inhibitor | 0.28 | Atu4685 | | LacI family transcriptional regulator | low | > 89 |
| Burkholderia phytofirmans PsJN | 0.24 | BPHYT_RS34350 | | endoribonuclease L-PSP | 0.32 | BPHYT_RS00410 | | LacI family transcription regulator | low | > 109 |
| Sinorhizobium meliloti 1021 | 0.24 | SM_b21139 | | translation initiation inhibitors | 0.29 | SM_b20667 | | LacI family transcriptional regulator | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.22 | HSERO_RS05705 | | endoribonuclease L-PSP | 0.34 | HSERO_RS05460 | | LacI family transcription regulator | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.21 | ABZR87_RS17675 | | RidA family protein | 0.26 | ABZR87_RS18255 | | LacI family DNA-binding transcriptional regulator | low | > 80 |
Not shown: 42 genomes with orthologs for CSW01_12735 only; 4 genomes with orthologs for CSW01_01485 only