Conservation of cofitness between CSW01_09955 and CSW01_01445 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09955 L-asparaginase 1 1.0 CSW01_01445 lysine decarboxylase 0.50 5
Enterobacter sp. TBS_079 0.74 MPMX20_01849 L-asparaginase 1 0.71 MPMX20_00870 Constitutive lysine decarboxylase low > 85
Klebsiella pneumoniae MKP103 0.73 KDGMDA_19250 asparaginase 0.78 KDGMDA_15475 lysine decarboxylase CadA low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3482 L-asparaginase I, cytoplasmic (EC 3.5.1.1) 0.77 GFF2452 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 78
Escherichia coli ECRC100 0.73 OKFHMN_26805 ansA asparaginase 0.78 OKFHMN_12475 cadA lysine decarboxylase CadA low > 79
Escherichia coli ECRC99 0.73 KEDOAH_01305 ansA asparaginase 0.78 KEDOAH_15690 cadA lysine decarboxylase CadA — —
Escherichia coli ECOR27 0.73 NOLOHH_17320 ansA asparaginase 0.78 NOLOHH_04740 cadA lysine decarboxylase CadA low > 76
Enterobacter asburiae PDN3 0.73 EX28DRAFT_1768 L-asparaginase, type I 0.71 EX28DRAFT_3774 Arginine/lysine/ornithine decarboxylases low > 76
Escherichia coli ECRC102 0.73 NIAGMN_01260 ansA asparaginase 0.78 NIAGMN_10320 cadA lysine decarboxylase CadA low > 80
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS02800 asparaginase 0.70 PagCFBP13505_RS13560 lysine decarboxylase LdcC low > 74
Pantoea sp. MT58 0.73 IAI47_08965 asparaginase 0.70 IAI47_15445 lysine decarboxylase LdcC low > 76
Serratia liquefaciens MT49 0.73 IAI46_14330 asparaginase 0.77 IAI46_20145 lysine decarboxylase CadA — —
Escherichia coli ECRC98 0.73 JDDGAC_01380 ansA asparaginase 0.78 JDDGAC_16110 cadA lysine decarboxylase CadA low > 87
Escherichia coli ECRC101 0.73 MCAODC_18605 ansA asparaginase 0.78 MCAODC_02985 cadA lysine decarboxylase CadA low > 87
Escherichia coli BW25113 0.73 b1767 ansA cytoplasmic asparaginase I (NCBI) 0.78 b4131 cadA lysine decarboxylase 1 (NCBI) low > 76
Escherichia coli ECOR38 0.73 HEPCGN_05180 ansA asparaginase 0.78 HEPCGN_11110 cadA lysine decarboxylase CadA low > 88
Escherichia coli BL21 0.73 ECD_01736 cytoplasmic L-asparaginase 1 0.78 ECD_04002 lysine decarboxylase, acid-inducible low > 61
Escherichia coli ECRC62 0.73 BNILDI_16105 ansA asparaginase 0.78 BNILDI_06750 cadA lysine decarboxylase CadA low > 75
Klebsiella michiganensis M5al 0.73 BWI76_RS11580 L-asparaginase 1 0.78 BWI76_RS07195 lysine decarboxylase CadA low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01965 L-asparaginase 1 0.78 OHPLBJKB_03912 Inducible lysine decarboxylase low > 74
Escherichia fergusonii Becca 0.73 EFB2_02227 L-asparaginase 1 0.78 EFB2_04451 Inducible lysine decarboxylase low > 86
Escherichia coli Nissle 1917 0.73 ECOLIN_RS09860 asparaginase 0.78 ECOLIN_RS23905 lysine decarboxylase CadA — —
Rahnella sp. WP5 0.73 EX31_RS06300 asparaginase 0.71 EX31_RS12950 lysine decarboxylase LdcC low > 89
Erwinia amylovora T8 0.72 OLJFJH_13240 asparaginase 0.70 OLJFJH_00545 lysine decarboxylase LdcC low > 58
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1792 L-asparaginases, type I 0.15 B158DRAFT_0656 Arginine/lysine/ornithine decarboxylases low > 40
Pseudomonas sp. S08-1 0.29 OH686_13275 L-asparaginase I, cytoplasmic 0.39 OH686_03560 Lysine decarboxylase, inducible low > 80
Pseudomonas stutzeri RCH2 0.28 Psest_4078 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 0.38 Psest_2075 Arginine/lysine/ornithine decarboxylases low > 67
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_09960 L-asparaginase (EC 3.5.1.1) (from data) 0.38 AO353_23560 lysine decarboxylase low > 101
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2023 L-asparaginase (EC 3.5.1.1) (from data) 0.38 Pf1N1B4_4600 Lysine decarboxylase, inducible (EC 4.1.1.18) 0.25 36
Pseudomonas simiae WCS417 0.27 PS417_28140 asparaginase 0.38 PS417_12240 lysine decarboxylase low > 88
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_740 L-asparaginase (EC 3.5.1.1) (from data) 0.38 PfGW456L13_3336 Lysine decarboxylase, inducible (EC 4.1.1.18) low > 87
Pseudomonas segetis P6 0.26 ACVTMO_RS00810 asparaginase 0.38 ACVTMO_RS13885 Orn/Lys/Arg family decarboxylase low > 75
Pseudomonas orientalis W4I3 0.26 QF045_RS02500 asparaginase 0.38 QF045_RS14775 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein low > 93
Pseudomonas lactucae CFBP13502 0.26 GEMAOFIL_00094 L-asparaginase 1 0.38 GEMAOFIL_02693 Biodegradative arginine decarboxylase low > 96
Pseudomonas putida KT2440 0.25 PP_0495 type 1 L-asparaginase 0.37 PP_4140 lysine decarboxylase low > 96
Pseudomonas aeruginosa PA14 0.25 IKLFDK_11055 asparaginase 0.39 IKLFDK_08840 lysine-specific pyridoxal 5'-phosphate-dependent carboxylase LdcA low > 98
Pseudomonas aeruginosa MRSN321 0.25 DY961_RS17645 asparaginase 0.39 DY961_RS20820 ldcA;inference=COORDINATES lysine-specific pyridoxal 5'-phosphate-dependent carboxylase LdcA low > 100
Pseudomonas aeruginosa PUPa3 0.25 DQ20_RS39875 asparaginase 0.39 DQ20_RS54900 ldcA;inference=COORDINATES lysine-specific pyridoxal 5'-phosphate-dependent carboxylase LdcA low > 101
Pseudomonas sp. SVBP6 0.25 COO64_RS15980 asparaginase 0.37 COO64_RS19270 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein low > 93
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS29825 asparaginase 0.38 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas fluorescens SBW25 0.24 PFLU_RS29825 asparaginase 0.38 PFLU_RS12930 lysine decarboxylase low > 109
Pseudomonas sp. BP01 0.24 JOY50_RS20220 asparaginase 0.36 JOY50_RS07070 Orn/Lys/Arg decarboxylase N-terminal domain-containing protein low > 84
Paraburkholderia bryophila 376MFSha3.1 0.13 H281DRAFT_00783 L-asparaginase 0.33 H281DRAFT_00160 ornithine decarboxylase — —
Paraburkholderia graminis OAS925 0.13 ABIE53_001995 L-asparaginase 0.33 ABIE53_001270 arginine decarboxylase — —
Burkholderia phytofirmans PsJN 0.12 BPHYT_RS08815 L-asparaginase (EC 3.5.1.1) (from data) 0.33 BPHYT_RS04980 lysine decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS15770 asparaginase 0.34 RALBFv3_RS04325 lysine decarboxylase — —
Ralstonia solanacearum UW163 0.11 UW163_RS13215 asparaginase 0.34 UW163_RS09345 lysine decarboxylase — —
Ralstonia sp. UNC404CL21Col 0.11 ABZR87_RS11340 asparaginase 0.34 ABZR87_RS16180 arginine/lysine/ornithine decarboxylase low > 80
Ralstonia solanacearum PSI07 0.11 RPSI07_RS17595 asparaginase 0.34 RPSI07_RS13045 lysine decarboxylase — —
Variovorax sp. SCN45 0.11 GFF356 L-asparaginase (EC 3.5.1.1) 0.33 GFF232 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) low > 127
Ralstonia solanacearum GMI1000 0.11 RS_RS06550 asparaginase 0.34 RS_RS11875 lysine decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.11 QEN71_RS22565 asparaginase 0.34 QEN71_RS25000 arginine/lysine/ornithine decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.10 RR42_RS12610 glutaminase 0.34 RR42_RS15940 lysine decarboxylase — —
Acidovorax sp. GW101-3H11 0.09 Ac3H11_2391 L-asparaginase (EC 3.5.1.1) 0.33 Ac3H11_2914 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.08 GFF4502 L-asparaginase (EC 3.5.1.1) 0.34 GFF4333 Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) low > 90

Not shown: 35 genomes with orthologs for CSW01_09955 only; 7 genomes with orthologs for CSW01_01445 only