Conservation of cofitness between CSW01_01115 and CSW01_01045 in Vibrio cholerae E7946 ATCC 55056

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01115 ribonuclease PH 1.0 CSW01_01045 DNA helicase RecQ 0.40 11
Dickeya dianthicola 67-19 0.78 HGI48_RS00675 ribonuclease PH 0.66 HGI48_RS20005 ATP-dependent DNA helicase RecQ low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS00730 ribonuclease PH 0.66 DZA65_RS21045 ATP-dependent DNA helicase RecQ low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS20540 ribonuclease PH 0.66 DDA3937_RS19850 ATP-dependent DNA helicase RecQ low > 74
Pectobacterium carotovorum WPP14 0.76 HER17_RS20855 ribonuclease PH 0.65 HER17_RS01395 ATP-dependent DNA helicase RecQ low > 75
Erwinia amylovora T8 0.75 OLJFJH_05765 ribonuclease PH 0.66 OLJFJH_06445 ATP-dependent DNA helicase RecQ low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.65 GFF248 ATP-dependent DNA helicase RecQ low > 78
Enterobacter sp. TBS_079 0.74 MPMX20_00092 Ribonuclease PH 0.66 MPMX20_04458 ATP-dependent DNA helicase RecQ low > 85
Enterobacter asburiae PDN3 0.74 EX28DRAFT_3893 ribonuclease PH 0.66 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ low > 76
Erwinia tracheiphila SCR3 0.73 LU632_RS22020 rph ribonuclease PH 0.66 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ low > 74
Serratia liquefaciens MT49 0.73 IAI46_24850 ribonuclease PH 0.66 IAI46_00770 ATP-dependent DNA helicase RecQ low > 86
Escherichia coli ECOR27 0.73 NOLOHH_07470 rph ribonuclease PH 0.67 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ low > 75
Pantoea sp. MT58 0.73 IAI47_00595 ribonuclease PH 0.67 IAI47_18360 ATP-dependent DNA helicase RecQ low > 76
Escherichia coli ECRC102 0.73 NIAGMN_13350 rph ribonuclease PH 0.67 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ — —
Klebsiella michiganensis M5al 0.73 BWI76_RS27390 ribonuclease PH 0.66 BWI76_RS01245 DNA helicase RecQ low > 92
Escherichia coli ECOR38 0.73 HEPCGN_14410 rph ribonuclease PH 0.67 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ low > 87
Escherichia coli ECRC98 0.73 JDDGAC_19215 rph ribonuclease PH 0.67 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ low > 86
Escherichia coli ECRC101 0.73 MCAODC_06100 rph ribonuclease PH 0.67 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ low > 87
Escherichia fergusonii Becca 0.73 EFB2_00170 Ribonuclease PH 0.67 EFB2_04815 ATP-dependent DNA helicase RecQ low > 86
Escherichia coli ECRC62 0.73 BNILDI_04045 rph ribonuclease PH 0.67 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ low > 75
Escherichia coli ECRC100 0.73 OKFHMN_15590 rph ribonuclease PH 0.67 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ low > 80
Escherichia coli Nissle 1917 0.73 ECOLIN_RS20755 ribonuclease PH 0.67 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ low > 55
Escherichia coli BL21 0.73 ECD_03500 ribonuclease PH 0.66 ECD_03701 ATP-dependent DNA helicase low > 61
Escherichia coli ECRC99 0.73 KEDOAH_12555 rph ribonuclease PH 0.67 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00059 Ribonuclease PH 0.67 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ low > 73
Rahnella sp. WP5 0.72 EX31_RS14505 ribonuclease PH 0.65 EX31_RS15210 ATP-dependent DNA helicase RecQ low > 89
Shewanella sp. ANA-3 0.71 Shewana3_3777 RNAse PH (RefSeq) 0.59 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.71 MIT1002_04071 Ribonuclease PH 0.54 MIT1002_00148 ATP-dependent DNA helicase RecQ low > 70
Shewanella oneidensis MR-1 0.70 SO4256 rph ribonuclease PH (NCBI ptt file) 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.70 Shew_3488 ribonuclease PH (RefSeq) 0.58 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) low > 60
Escherichia coli BW25113 0.70 b3643 rph ribonuclease PH (NCBI) 0.67 b3822 recQ ATP-dependent DNA helicase (NCBI) low > 76
Shewanella amazonensis SB2B 0.69 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.57 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF3254 Ribonuclease PH (EC 2.7.7.56) 0.42 GFF1958 ATP-dependent DNA helicase RecQ low > 90
Pseudomonas aeruginosa PA14 0.65 IKLFDK_26785 ribonuclease PH 0.45 IKLFDK_17145 DNA helicase RecQ low > 101
Pseudomonas sp. S08-1 0.64 OH686_13570 ribonuclease PH 0.45 OH686_20670 ATP-dependent DNA helicase RecQ low > 80
Pseudomonas sp. SVBP6 0.64 COO64_RS01510 rph ribonuclease PH 0.46 COO64_RS21845 recQ DNA helicase RecQ low > 93
Dechlorosoma suillum PS 0.64 Dsui_0494 ribonuclease PH 0.42 Dsui_3092 ATP-dependent DNA helicase RecQ low > 51
Pseudomonas sp. BP01 0.64 JOY50_RS09025 rph ribonuclease PH 0.44 JOY50_RS01155 recQ DNA helicase RecQ low > 84
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_0213 RNAse PH 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ low > 87
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_0213 RNAse PH 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_09260 ribonuclease PH 0.44 AO353_18430 ATP-dependent DNA helicase RecQ low > 101
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ low > 103
Pseudomonas putida KT2440 0.64 PP_5294 Ribonuclease PH 0.44 PP_4516 ATP-dependent DNA 3 low > 96
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ low > 87
Marinobacter adhaerens HP15 0.64 HP15_300 ribonuclease PH 0.45 HP15_1718 ATP-dependent DNA helicase RecQ low > 73
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_12500 ribonuclease PH 0.45 AO356_04050 ATP-dependent DNA helicase RecQ low > 104
Pseudomonas sp. RS175 0.63 PFR28_04420 Ribonuclease PH 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ low > 88
Variovorax sp. SCN45 0.63 GFF2381 Ribonuclease PH (EC 2.7.7.56) 0.42 GFF6415 ATP-dependent DNA helicase RecQ low > 127
Pseudomonas stutzeri RCH2 0.63 Psest_3813 ribonuclease PH 0.44 Psest_1869 ATP-dependent DNA helicase RecQ low > 67
Pseudomonas fluorescens SBW25 0.63 PFLU_RS29490 ribonuclease PH 0.44 PFLU_RS21920 DNA helicase RecQ low > 109
Pseudomonas sp. DMC3 0.63 GFF415 Ribonuclease PH 0.44 GFF2380 ATP-dependent DNA helicase RecQ low > 89
Pseudomonas simiae WCS417 0.63 PS417_27810 ribonuclease PH 0.44 PS417_19950 ATP-dependent DNA helicase RecQ low > 88
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS29490 ribonuclease PH 0.44 PFLU_RS21920 DNA helicase RecQ low > 109
Variovorax sp. OAS795 0.63 ABID97_RS23640 ribonuclease PH 0.44 ABID97_RS03395 DNA helicase RecQ low > 91
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS11900 ribonuclease PH 0.45 ABZR86_RS19925 DNA helicase RecQ low > 74
Methylophilus sp. DMC18 0.62 GFF2136 Ribonuclease PH 0.43 GFF2139 ATP-dependent DNA helicase RecQ low > 43
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) 0.44 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ low > 74
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS03645 ribonuclease PH 0.43 QEN71_RS28295 DNA helicase RecQ low > 153
Azospirillum brasilense Sp245 0.61 AZOBR_RS02205 ribonuclease PH 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ low > 97
Bosea sp. OAE506 0.61 ABIE41_RS03295 ribonuclease PH 0.41 ABIE41_RS04160 DNA helicase RecQ low > 77
Acidovorax sp. GW101-3H11 0.60 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ low > 79
Rhodopseudomonas palustris CGA009 0.60 TX73_001710 ribonuclease PH 0.41 TX73_025080 DNA helicase RecQ low > 86
Paraburkholderia graminis OAS925 0.60 ABIE53_003234 ribonuclease PH 0.43 ABIE53_003792 ATP-dependent DNA helicase RecQ low > 113
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS15325 ribonuclease PH 0.43 BPHYT_RS18145 ATP-dependent DNA helicase RecQ low > 109
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04008 RNAse PH 0.42 H281DRAFT_06595 ATP-dependent DNA helicase RecQ — —
Sinorhizobium meliloti 1021 0.60 SMc01144 ribonuclease PH 0.42 SMc01566 ATP-dependent DNA helicase low > 103
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_12150 rph ribonuclease PH 0.44 OKGIIK_02375 recQ DNA helicase RecQ — —
Rhodanobacter denitrificans MT42 0.59 LRK55_RS11470 ribonuclease PH 0.45 LRK55_RS12700 DNA helicase RecQ low > 63
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS11745 ribonuclease PH 0.45 LRK54_RS13000 DNA helicase RecQ low > 59
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS16795 ribonuclease PH 0.44 LRK53_RS15600 DNA helicase RecQ — —
Azospirillum sp. SherDot2 0.59 MPMX19_02576 Ribonuclease PH 0.41 MPMX19_00123 ATP-dependent DNA helicase RecQ low > 112
Lysobacter sp. OAE881 0.59 ABIE51_RS17285 ribonuclease PH 0.42 ABIE51_RS05145 DNA helicase RecQ low > 62
Agrobacterium fabrum C58 0.59 Atu0327 ribonuclease PH 0.44 Atu0061 ATP-dependent DNA helicase — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS04890 ribonuclease PH 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ low > 128
Rhizobium sp. OAE497 0.59 ABIE40_RS01640 ribonuclease PH 0.44 ABIE40_RS12745 DNA helicase RecQ low > 107
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS10655 ribonuclease PH 0.44 HSERO_RS02465 ATP-dependent DNA helicase RecQ low > 78
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS15255 ribonuclease PH 0.42 ABZR87_RS02880 DNA helicase RecQ low > 80
Ralstonia solanacearum PSI07 0.58 RPSI07_RS13840 ribonuclease PH 0.42 RPSI07_RS10025 DNA helicase RecQ — —
Ralstonia solanacearum GMI1000 0.58 RS_RS10830 ribonuclease PH 0.42 RS_RS15155 DNA helicase RecQ — —
Rhodospirillum rubrum S1H 0.57 Rru_A3641 Ribonuclease PH (NCBI) 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) low > 58
Ralstonia solanacearum UW163 0.57 UW163_RS10375 ribonuclease PH 0.42 UW163_RS06400 DNA helicase RecQ — —
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS03345 ribonuclease PH 0.42 RALBFv3_RS07220 DNA helicase RecQ low > 76
Castellaniella sp019104865 MT123 0.57 ABCV34_RS03515 ribonuclease PH 0.40 ABCV34_RS07985 DNA helicase RecQ low > 48
Xanthobacter sp. DMC5 0.57 GFF1893 Ribonuclease PH 0.47 GFF753 ATP-dependent DNA helicase RecQ — —
Magnetospirillum magneticum AMB-1 0.55 AMB_RS22760 ribonuclease PH 0.43 AMB_RS21505 DNA helicase RecQ low > 64
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_00151 ribonuclease PH 0.35 CCNA_03578 ATP-dependent DNA helicase recQ low > 67
Caulobacter crescentus NA1000 0.54 CCNA_00151 ribonuclease PH 0.35 CCNA_03578 ATP-dependent DNA helicase recQ low > 66
Dinoroseobacter shibae DFL-12 0.54 Dshi_3463 ribonuclease PH (RefSeq) 0.43 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS13125 ribonuclease PH 0.37 A4249_RS14575 DNA helicase RecQ low > 48
Bifidobacterium breve UCC2003 0.52 BBR_RS12405 ribonuclease PH 0.32 BBR_RS13150 DNA helicase RecQ low > 34
Phaeobacter inhibens DSM 17395 0.52 PGA1_c35030 ribonuclease PH 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ low > 62
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_2741 ribonuclease PH 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ — —

Not shown: 4 genomes with orthologs for CSW01_01115 only; 12 genomes with orthologs for CSW01_01045 only