Conservation of cofitness between Atu3290 and Atu3783 in Agrobacterium fabrum C58

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3290 phosphomethylpyrimidine kinase 1.0 Atu3783 glutamate synthase subunit beta 0.77 17
Sinorhizobium meliloti 1021 0.59 SM_b20962 phoshomethylpyrimidine kinase 0.88 SMc04026 glutamate synthase low > 103
Xanthobacter sp. DMC5 0.55 GFF1029 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.66 GFF2523 Glutamate synthase [NADPH] small chain
Rhodopseudomonas palustris CGA009 0.53 TX73_020570 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.58 TX73_004595 glutamate synthase subunit beta
Enterobacter asburiae PDN3 0.51 EX28DRAFT_0469 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 EX28DRAFT_3276 glutamate synthase small subunit family protein, proteobacterial low > 76
Pectobacterium carotovorum WPP14 0.50 HER17_RS06265 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 HER17_RS19915 glutamate synthase small subunit low > 75
Escherichia coli ECRC101 0.50 MCAODC_21085 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.27 MCAODC_08400 gltD glutamate synthase subunit GltD low > 88
Escherichia coli ECRC100 0.50 OKFHMN_24075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.27 OKFHMN_17880 gltD glutamate synthase subunit GltD low > 79
Escherichia coli ECRC99 0.50 KEDOAH_04075 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.27 KEDOAH_10270 gltD glutamate synthase subunit GltD
Escherichia coli BW25113 0.50 b2103 thiD phosphomethylpyrimidine kinase (NCBI) 0.26 b3213 gltD glutamate synthase, 4Fe-4S protein, small subunit (NCBI) low > 76
Escherichia coli ECRC62 0.50 BNILDI_14330 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 BNILDI_01855 gltD glutamate synthase subunit GltD low > 75
Escherichia coli ECRC98 0.50 JDDGAC_28185 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.27 JDDGAC_21505 gltD glutamate synthase subunit GltD low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_01607 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 OHPLBJKB_00487 Glutamate synthase [NADPH] small chain low > 74
Escherichia coli ECRC102 0.50 NIAGMN_22020 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.27 NIAGMN_15640 gltD glutamate synthase subunit GltD low > 80
Escherichia coli ECOR27 0.50 NOLOHH_15415 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 NOLOHH_09680 gltD glutamate synthase subunit GltD low > 76
Klebsiella michiganensis M5al 0.50 BWI76_RS19375 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 BWI76_RS25320 glutamate synthase low > 92
Enterobacter sp. TBS_079 0.50 MPMX20_03076 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.27 MPMX20_04127 Glutamate synthase [NADPH] small chain low > 85
Escherichia coli ECOR38 0.50 HEPCGN_02760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.27 HEPCGN_16755 gltD glutamate synthase subunit GltD 0.65 48
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF3834 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.26 GFF2957 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 78
Rahnella sp. WP5 0.50 EX31_RS20390 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 EX31_RS12510 FAD-dependent oxidoreductase low > 89
Escherichia coli BL21 0.50 ECD_02031 hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase 0.26 ECD_03078 glutamate synthase, 4Fe-4S protein, small subunit low > 61
Escherichia fergusonii Becca 0.50 EFB2_01754 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 EFB2_00610 Glutamate synthase [NADPH] small chain low > 86
Serratia liquefaciens MT49 0.50 IAI46_19100 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.25 IAI46_22350 glutamate synthase small subunit 0.52 20
Erwinia tracheiphila HP pepo 2.2 0.50 IJEDHG_18705 thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 IJEDHG_13700 glutamate synthase small subunit low > 61
Erwinia tracheiphila SCR3 0.49 LU632_RS08590 thiD bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 LU632_RS21320 glutamate synthase small subunit low > 74
Klebsiella pneumoniae MKP103 0.49 KDGMDA_26425 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 KDGMDA_06150 Glutamate synthase [NADPH] small chain low > 95
Escherichia coli Nissle 1917 0.49 ECOLIN_RS12335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.27 ECOLIN_RS18480 glutamate synthase subunit GltD
Dickeya dadantii 3937 0.49 DDA3937_RS15335 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 DDA3937_RS01660 FAD-dependent oxidoreductase 0.77 12
Bosea sp. OAE506 0.48 ABIE41_RS21620 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.66 ABIE41_RS08570 glutamate synthase subunit beta
Dickeya dianthicola 67-19 0.48 HGI48_RS15410 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 HGI48_RS01555 glutamate synthase small subunit 0.77 36
Dickeya dianthicola ME23 0.48 DZA65_RS16235 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 DZA65_RS01630 FAD-dependent oxidoreductase 0.71 39
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_00587 hydroxymethylpyrimidine kinase /phosphomethylpyrimidine kinase 0.49 H281DRAFT_05621 glutamate synthase (NADH) small subunit
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS06305 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.50 QEN71_RS28005 glutamate synthase subunit beta
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_0215 phosphomethylpyrimidine kinase 0.42 Echvi_1243 glutamate synthases, NADH/NADPH, small subunit low > 79
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS12250 phosphomethylpyrimidine kinase 0.50 BPHYT_RS17850 dihydropyrimidine dehydrogenase subunit A
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS03470 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.37 HMPREF1078_RS01265 glutamate synthase subunit beta low > 61
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_06545 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.43 CSW01_12025 glutamate synthase subunit beta low > 62
Bacteroides thetaiotaomicron VPI-5482 0.44 BT0790 phosphomethylpyrimidine kinase (NCBI ptt file) 0.32 BT0552 glutamate synthase, small subunit (NCBI ptt file) low > 81
Rhizobium sp. OAE497 0.43 ABIE40_RS25930 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.93 ABIE40_RS16270 glutamate synthase subunit beta
Paraburkholderia graminis OAS925 0.43 ABIE53_002529 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.50 ABIE53_003732 glutamate synthase (NADPH/NADH) small chain
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS06820 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.31 HMPREF1058_RS06925 glutamate synthase subunit beta low > 67
Phocaeicola dorei CL03T12C01 0.42 ABI39_RS20615 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.32 ABI39_RS20690 glutamate synthase subunit beta low > 72
Dinoroseobacter shibae DFL-12 0.42 Dshi_0915 phosphomethylpyrimidine kinase (RefSeq) 0.23 Dshi_0001 glutamate synthase, small subunit (RefSeq) low > 64
Cellulophaga baltica 18 0.42 M666_RS03830 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.49 M666_RS01745 glutamate synthase subunit beta low > 67
Bacteroides ovatus ATCC 8483 0.42 BACOVA_02530 phosphomethylpyrimidine kinase 0.32 BACOVA_03757 pyridine nucleotide-disulfide oxidoreductase low > 96
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14705 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.31 HMPREF1181_RS16050 glutamate synthase subunit beta 0.65 31
Methylophilus sp. DMC18 0.41 GFF892 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.49 GFF2800 Glutamate synthase [NADPH] small chain
Castellaniella sp019104865 MT123 0.41 ABCV34_RS14505 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.48 ABCV34_RS11155 glutamate synthase subunit beta
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF249 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.51 GFF1326 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 90
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS24160 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.45 CA265_RS08705 glutamate synthase low > 88
Acidovorax sp. GW101-3H11 0.39 Ac3H11_1063 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.50 Ac3H11_4711 Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Rhodospirillum rubrum S1H 0.38 Rru_A1102 Phosphomethylpyrimidine kinase (NCBI) 0.23 Rru_A0018 Glutamate synthase, NADH/NADPH, small subunit 2 (NCBI)
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS03825 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.48 LRK53_RS00065 glutamate synthase subunit beta low > 59
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS08810 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.42 ABZR88_RS06910 glutamate synthase subunit beta low > 71
Bifidobacterium breve UCC2003 0.36 BBR_RS17215 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.37 BBR_RS15260 glutamate synthase subunit beta low > 34
Desulfovibrio vulgaris Hildenborough JW710 0.36 DVU0931 thiD phosphomethylpyrimidine kinase (TIGR) 0.19 DVU2476 gltA glutamate synthase, small subunit (TIGR)
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS00760 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.25 ABZR86_RS16800 FAD-dependent oxidoreductase
Variovorax sp. OAS795 0.35 ABID97_RS15330 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.51 ABID97_RS23220 glutamate synthase subunit beta
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS09905 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.48 RALBFv3_RS06910 glutamate synthase subunit beta
Ralstonia solanacearum UW163 0.35 UW163_RS03675 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.48 UW163_RS06705 glutamate synthase subunit beta
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS04830 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.50 ABZR87_RS02565 glutamate synthase subunit beta
Ralstonia solanacearum GMI1000 0.34 RS_RS00495 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.49 RS_RS14855 glutamate synthase subunit beta
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3091.1 hypothetical protein 0.25 Xcc-8004.43.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) 0.72 18
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_03331 phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase 0.24 CCNA_03721 glutamate synthase (NADPH) small chain GltD
Caulobacter crescentus NA1000 0.34 CCNA_03331 phosphomethylpyrimidine kinase/hydroxymethylpyrimidine kinase 0.24 CCNA_03721 glutamate synthase (NADPH) small chain GltD
Ralstonia solanacearum PSI07 0.34 RPSI07_RS23455 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.47 RPSI07_RS10325 glutamate synthase subunit beta
Azospirillum sp. SherDot2 0.33 MPMX19_06182 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 MPMX19_02658 Glutamate synthase [NADPH] small chain
Lysobacter sp. OAE881 0.33 ABIE51_RS07970 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.25 ABIE51_RS01315 FAD-dependent oxidoreductase
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS15985 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 A4249_RS16110 NAD(P)-dependent oxidoreductase
Sphingobium sp. HT1-2 0.33 GFF2573 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.26 GFF763 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 95
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_1376 phosphomethylpyrimidine kinase (RefSeq) 0.18 DvMF_0938 putative oxidoreductase (RefSeq)
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS01370 phosphomethylpyrimidine kinase 0.52 RR42_RS18985 glutamate synthase
Magnetospirillum magneticum AMB-1 0.29 AMB_RS16155 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.54 AMB_RS11780 glutamate synthase subunit beta
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_03835 Bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.47 OKGIIK_15205 Glutamate synthase low > 53
Acinetobacter baumannii LAC-4 0.28 RR41_RS15160 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.28 RR41_RS01600 FAD-dependent oxidoreductase
Acinetobacter radioresistens SK82 0.28 MPMX26_02438 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.27 MPMX26_02807 Glutamate synthase [NADPH] small chain
Pseudomonas aeruginosa PA14 0.27 IKLFDK_20515 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.26 IKLFDK_28360 glutamate synthase small subunit 0.33 50
Dechlorosoma suillum PS 0.27 Dsui_0662 phosphomethylpyrimidine kinase 0.48 Dsui_1097 NADH/NADPH-dependent glutamate synthase small subunit
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1961 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 0.25 Ga0059261_1797 glutamate synthase small subunit family protein, proteobacterial
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_15435 hydrogenase 0.26 AO356_09370 glutamate synthase low > 104
Pseudomonas sp. BP01 0.27 JOY50_RS21745 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 JOY50_RS09325 FAD-dependent oxidoreductase low > 84
Pseudomonas putida KT2440 0.27 PP_4782 Phosphomethylpyrimidine kinase 0.25 PP_5075 glutamate synthase (NADPH) beta subunit low > 96
Pseudomonas simiae WCS417 0.27 PS417_24600 hydrogenase 0.26 PS417_02005 glutamate synthase low > 88
Pseudomonas sp. SVBP6 0.26 COO64_RS15485 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 COO64_RS13090 FAD-dependent oxidoreductase 0.76 9
Pseudomonas fluorescens SBW25 0.26 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 PFLU_RS02050 NAD(P)-binding protein low > 109
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_06350 hydrogenase 0.26 AO353_12520 glutamate synthase low > 101
Pseudomonas sp. S08-1 0.26 OH686_09185 Hydroxymethylpyrimidine phosphate kinase ThiD 0.26 OH686_10000 Glutamate synthase [NADPH] small chain low > 80
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS26530 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 PFLU_RS02050 NAD(P)-binding protein low > 109
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_1385 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.26 PfGW456L13_271 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 87
Mycobacterium tuberculosis H37Rv 0.26 Rv0422c Probable phosphomethylpyrimidine kinase ThiD (HMP-phosphate kinase) (HMP-P kinase) 0.43 Rv3858c Probable NADH-dependent glutamate synthase (small subunit) GltD (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH)) (GLTS beta chain) (NADPH-GOGAT)
Pseudomonas sp. DMC3 0.26 GFF3905 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 GFF3103 Glutamate synthase [NADPH] small chain low > 89
Pseudomonas stutzeri RCH2 0.26 Psest_0537 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 Psest_3710 glutamate synthase small subunit family protein, proteobacterial low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_4340 phosphomethylpyrimidine kinase, putative 0.26 Psyr_0412 glutamate synthase (NADPH) small subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_4340 phosphomethylpyrimidine kinase, putative 0.26 Psyr_0412 glutamate synthase (NADPH) small subunit low > 86
Pseudomonas segetis P6 0.25 MPMX49_01077 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 MPMX49_04230 Glutamate synthase [NADPH] small chain low > 75
Pseudomonas sp. RS175 0.24 PFR28_03843 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 PFR28_05016 Glutamate synthase [NADPH] small chain low > 88
Herbaspirillum seropedicae SmR1 0.24 HSERO_RS02135 phosphomethylpyrimidine kinase 0.48 HSERO_RS19590 dihydropyrimidine dehydrogenase subunit A low > 78
Pseudomonas fluorescens FW300-N1B4 0.23 Pf1N1B4_2718 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.26 Pf1N1B4_1533 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 87
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_5024 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) 0.26 Pf6N2E2_3751 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) low > 103
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_05068 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 0.26 GEMAOFIL_00633 Glutamate synthase [NADPH] small chain low > 93
Phaeobacter inhibens DSM 17395 0.19 PGA1_c09030 phosphomethylpyrimidine kinase ThiD 0.23 PGA1_c36090 glutamate synthase [NADPH] small chain low > 62

Not shown: 7 genomes with orthologs for Atu3290 only; 10 genomes with orthologs for Atu3783 only