Conservation of cofitness between Atu3137 and Atu3141 in Agrobacterium fabrum C58

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3137 C4-dicarboxylate-binding protein 1.0 Atu3141 2-deoxy-D-gluconate 3-dehydrogenase 0.51 8
Xanthobacter sp. DMC5 0.65 GFF2557 Solute-binding protein 0.65 GFF2561 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase — —
Bosea sp. OAE506 0.65 ABIE41_RS07830 TRAP transporter substrate-binding protein 0.65 ABIE41_RS07840 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 77
Azospirillum sp. SherDot2 0.59 MPMX19_05801 Solute-binding protein 0.58 MPMX19_05789 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase low > 112
Azospirillum brasilense Sp245 0.58 AZOBR_RS30130 C4-dicarboxylate ABC transporter 0.61 AZOBR_RS31390 3-ketoacyl-ACP reductase low > 97
Sinorhizobium meliloti 1021 0.58 SM_b21353 periplasmic C4-dicarboxylate transport protein 0.60 SM_b21348 2-deoxy-D-gluconate 3-dehydrogenase low > 103
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_01513 C4-dicarboxylate-binding protein 0.62 CCNA_01559 2-deoxy-D-gluconate 3-dehydrogenase low > 67
Caulobacter crescentus NA1000 0.48 CCNA_01513 C4-dicarboxylate-binding protein 0.62 CCNA_01559 2-deoxy-D-gluconate 3-dehydrogenase low > 66
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS24175 C4-dicarboxylate ABC transporter 0.52 BPHYT_RS10945 2-deoxy-D-gluconate 3-dehydrogenase low > 109
Paraburkholderia graminis OAS925 0.47 ABIE53_006502 tripartite ATP-independent transporter DctP family solute receptor 0.55 ABIE53_002285 2-deoxy-D-gluconate 3-dehydrogenase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_05324 tripartite ATP-independent transporter solute receptor, DctP family 0.55 H281DRAFT_01159 2-deoxy-D-gluconate 3-dehydrogenase low > 103
Variovorax sp. SCN45 0.47 GFF2918 TRAP-type C4-dicarboxylate transport system, periplasmic component 0.34 GFF2166 Oxidoreductase, short-chain dehydrogenase/reductase family — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS21090 TRAP transporter substrate-binding protein 0.55 ABZR87_RS20810 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 80
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.201.1 TRAP-type C4-dicarboxylate transport system, periplasmic component 0.58 Xcc-8004.207.1 hypothetical protein low > 74
Lysobacter sp. OAE881 0.40 ABIE51_RS02850 TRAP transporter substrate-binding protein 0.58 ABIE51_RS02825 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 62
Pantoea agglomerans CFBP13505 P0401 0.38 PagCFBP13505_RS16465 TRAP transporter substrate-binding protein 0.57 PagCFBP13505_RS17570 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 74
Pantoea sp. MT58 0.38 IAI47_03230 TRAP transporter substrate-binding protein 0.58 IAI47_11020 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 76
Rahnella sp. WP5 0.36 EX31_RS08010 TRAP transporter substrate-binding protein 0.58 EX31_RS01480 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 89
Enterobacter sp. TBS_079 0.36 MPMX20_04349 Solute-binding protein 0.59 MPMX20_01886 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase low > 85
Pectobacterium carotovorum WPP14 0.35 HER17_RS19675 TRAP transporter substrate-binding protein 0.57 HER17_RS11410 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 75
Klebsiella michiganensis M5al 0.34 BWI76_RS24125 hypothetical protein 0.59 BWI76_RS11775 2-deoxy-D-gluconate 3-dehydrogenase low > 92
Alteromonas macleodii MIT1002 0.34 MIT1002_02426 Extracytoplasmic solute receptor protein YiaO 0.52 MIT1002_03304 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase low > 70
Escherichia coli ECOR38 0.33 HEPCGN_18535 Bacterial extracellular solute-binding protein, family 7 0.57 HEPCGN_19585 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 88
Escherichia coli ECOR27 0.33 NOLOHH_11100 Bacterial extracellular solute-binding protein, family 7 0.56 NOLOHH_11810 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_03838 Solute-binding protein 0.57 OHPLBJKB_00887 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF3130 TRAP-type C4-dicarboxylate transport system, periplasmic component 0.57 GFF1327 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) low > 78
Escherichia coli ECRC62 0.33 BNILDI_07130 Bacterial extracellular solute-binding protein, family 7 0.57 BNILDI_10290 kduD 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 75
Escherichia coli Nissle 1917 0.32 ECOLIN_RS17380 TRAP transporter substrate-binding protein 0.57 ECOLIN_RS15950 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD low > 55
Cellulophaga baltica 18 0.32 M666_RS19720 TRAP transporter substrate-binding protein 0.46 M666_RS09885 SDR family oxidoreductase low > 67
Herbaspirillum seropedicae SmR1 0.23 HSERO_RS04240 C4-dicarboxylate ABC transporter 0.32 HSERO_RS02915 short-chain dehydrogenase low > 78

Not shown: 22 genomes with orthologs for Atu3137 only; 24 genomes with orthologs for Atu3141 only