| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Agrobacterium fabrum C58 | 1.0 | Atu2364 | | ABC transporter, membrane spanning protein | 1.0 | Atu0135 | | uracil phosphoribosyltransferase | 0.20 | 3 |
| Phaeobacter inhibens DSM 17395 | 0.57 | PGA1_262p02370 | | putative histidine transport system permease protein HisQ | 0.73 | PGA1_c11960 | | uracil phosphoribosyltransferase Upp | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.56 | SMc02258 | | ABC transporter permease | 0.89 | SMc04121 | | uracil phosphoribosyltransferase | low | > 103 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_13555 | | ABC transporter permease | 0.50 | PS417_04435 | | uracil phosphoribosyltransferase | 0.14 | 79 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_28140 | | ABC transporter permease | 0.51 | AO353_14855 | | uracil phosphoribosyltransferase | low | > 101 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS29650 | | histidine ABC transporter permease | 0.66 | RR42_RS30815 | | uracil phosphoribosyltransferase | low | > 128 |
| Escherichia coli ECRC100 | 0.39 | OKFHMN_22735 | hisQ | histidine ABC transporter permease HisQ | 0.52 | OKFHMN_21815 | upp | uracil phosphoribosyltransferase | low | > 79 |
| Escherichia coli ECRC98 | 0.39 | JDDGAC_26695 | hisQ | histidine ABC transporter permease HisQ | 0.52 | JDDGAC_25760 | upp | uracil phosphoribosyltransferase | low | > 87 |
| Escherichia coli ECRC102 | 0.39 | NIAGMN_20505 | hisQ | histidine ABC transporter permease HisQ | 0.52 | NIAGMN_19585 | upp | uracil phosphoribosyltransferase | low | > 80 |
| Escherichia coli ECRC99 | 0.39 | KEDOAH_05460 | hisQ | histidine ABC transporter permease HisQ | 0.52 | KEDOAH_06405 | upp | uracil phosphoribosyltransferase | — | — |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_0296 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | 0.52 | EX28DRAFT_0170 | | uracil phosphoribosyltransferase (EC 2.4.2.9) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.39 | MPMX20_03243 | | Histidine transport system permease protein HisQ | 0.53 | MPMX20_03352 | | Uracil phosphoribosyltransferase | low | > 85 |
| Klebsiella michiganensis M5al | 0.39 | BWI76_RS20330 | | histidine/lysine/arginine/ornithine ABC transporter permease HisQ | 0.52 | BWI76_RS20945 | | uracil phosphoribosyltransferase | low | > 92 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_06474 | | amino acid ABC transporter membrane protein 1, PAAT family | 0.54 | H281DRAFT_04523 | | uracil phosphoribosyltransferase | low | > 103 |
| Escherichia coli ECOR38 | 0.39 | HEPCGN_21930 | hisQ | histidine ABC transporter permease HisQ | 0.52 | HEPCGN_20980 | upp | uracil phosphoribosyltransferase | 0.36 | 58 |
| Escherichia coli ECRC62 | 0.39 | BNILDI_13275 | hisQ | histidine ABC transporter permease HisQ | 0.52 | BNILDI_12275 | upp | uracil phosphoribosyltransferase | low | > 75 |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_14355 | hisQ | histidine ABC transporter permease HisQ | 0.52 | NOLOHH_13465 | upp | uracil phosphoribosyltransferase | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS23395 | | histidine ABC transporter permease HisQ | 0.55 | QEN71_RS24390 | | uracil phosphoribosyltransferase | low | > 153 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_01397 | | Histidine transport system permease protein HisQ | 0.52 | OHPLBJKB_01228 | | Uracil phosphoribosyltransferase | low | > 74 |
| Escherichia fergusonii Becca | 0.39 | EFB2_01550 | | Histidine transport system permease protein HisQ | 0.52 | EFB2_01400 | | Uracil phosphoribosyltransferase | low | > 86 |
| Acinetobacter baumannii LAC-4 | 0.39 | RR41_RS06085 | | histidine ABC transporter permease HisQ | 0.49 | RR41_RS15445 | | uracil phosphoribosyltransferase | low | > 55 |
| Klebsiella pneumoniae MKP103 | 0.39 | KDGMDA_27165 | | amino acid ABC transporter permease | 0.52 | KDGMDA_27790 | | uracil phosphoribosyltransferase | low | > 95 |
| Serratia liquefaciens MT49 | 0.39 | IAI46_17795 | | histidine ABC transporter permease HisQ | 0.53 | IAI46_18880 | | uracil phosphoribosyltransferase | low | > 87 |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS13385 | | histidine ABC transporter permease HisQ | 0.52 | ECOLIN_RS14185 | | uracil phosphoribosyltransferase | — | — |
| Escherichia coli ECRC101 | 0.39 | MCAODC_13775 | hisQ | histidine ABC transporter permease HisQ | 0.52 | MCAODC_12345 | upp | uracil phosphoribosyltransferase | low | > 87 |
| Escherichia coli BW25113 | 0.38 | b2308 | hisQ | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | 0.52 | b2498 | upp | uracil phosphoribosyltransferase (VIMSS) | low | > 76 |
| Escherichia coli BL21 | 0.38 | ECD_02233 | | histidine ABC transporter permease | 0.52 | ECD_02390 | | uracil phosphoribosyltransferase | low | > 61 |
| Pseudomonas aeruginosa PA14 | 0.38 | IKLFDK_14855 | | histidine ABC transporter permease | 0.49 | IKLFDK_00265 | | uracil phosphoribosyltransferase | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.38 | DY961_RS02370 | | ABC transporter permease | 0.49 | DY961_RS29060 | upp;go_function=uracil | uracil phosphoribosyltransferase | low | > 100 |
| Erwinia amylovora T8 | 0.38 | OLJFJH_11295 | | amino acid ABC transporter permease | 0.52 | OLJFJH_10595 | | uracil phosphoribosyltransferase | low | > 58 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF1917 | | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) | 0.52 | GFF2171 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | low | > 78 |
| Pseudomonas aeruginosa PUPa3 | 0.38 | DQ20_RS33220 | | ABC transporter permease | 0.49 | DQ20_RS55635 | upp;go_function=uracil | uracil phosphoribosyltransferase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.37 | PfGW456L13_1965 | | Arginine/ornithine ABC transporter, permease protein AotQ | 0.50 | PfGW456L13_1597 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | low | > 87 |
| Pseudomonas sp. DMC3 | 0.37 | GFF4885 | | Histidine transport system permease protein HisQ | 0.50 | GFF4471 | | Uracil phosphoribosyltransferase | low | > 89 |
| Pseudomonas fluorescens SBW25-INTG | 0.37 | PFLU_RS23345 | | ABC transporter permease | 0.51 | PFLU_RS04485 | | uracil phosphoribosyltransferase | 0.51 | 33 |
| Pseudomonas orientalis W4I3 | 0.37 | QF045_RS23845 | | ABC transporter permease | 0.50 | QF045_RS07420 | | uracil phosphoribosyltransferase | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.37 | PFLU_RS23345 | | ABC transporter permease | 0.51 | PFLU_RS04485 | | uracil phosphoribosyltransferase | 0.84 | 18 |
| Pseudomonas fluorescens FW300-N2C3 | 0.37 | AO356_18705 | | L-Arginine ABC transporter, permease component 2 (from data) | 0.52 | AO356_16565 | | uracil phosphoribosyltransferase | low | > 104 |
| Pseudomonas lactucae CFBP13502 | 0.37 | GEMAOFIL_04490 | | Histidine transport system permease protein HisQ | 0.51 | GEMAOFIL_01092 | | Uracil phosphoribosyltransferase | low | > 96 |
| Pantoea sp. MT58 | 0.37 | IAI47_06290 | | histidine ABC transporter permease HisQ | 0.53 | IAI47_05185 | | uracil phosphoribosyltransferase | low | > 76 |
| Pseudomonas sp. SVBP6 | 0.37 | COO64_RS21635 | | ABC transporter permease | 0.51 | COO64_RS03295 | upp | uracil phosphoribosyltransferase | low | > 93 |
| Pantoea agglomerans CFBP13505 P0401 | 0.37 | PagCFBP13505_RS00245 | | ABC transporter permease subunit | 0.52 | PagCFBP13505_RS15075 | | uracil phosphoribosyltransferase | low | > 74 |
| Rahnella sp. WP5 | 0.37 | EX31_RS19555 | | ABC transporter permease subunit | 0.52 | EX31_RS22700 | | uracil phosphoribosyltransferase | low | > 89 |
| Pseudomonas putida KT2440 | 0.37 | PP_4485 | | histidine / lysine / arginine / ornithine ABC transporter - permease subunit | 0.50 | PP_0746 | | Uracil phosphoribosyltransferase | low | > 96 |
| Dickeya dadantii 3937 | 0.36 | DDA3937_RS14420 | | histidine ABC transporter permease HisQ | 0.52 | DDA3937_RS06030 | | uracil phosphoribosyltransferase | low | > 74 |
| Dickeya dianthicola ME23 | 0.36 | DZA65_RS15320 | | ABC transporter permease subunit | 0.52 | DZA65_RS06425 | | uracil phosphoribosyltransferase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.36 | HGI48_RS14390 | | histidine ABC transporter permease HisQ | 0.52 | HGI48_RS06075 | | uracil phosphoribosyltransferase | low | > 71 |
| Pseudomonas sp. BP01 | 0.35 | JOY50_RS01000 | | ABC transporter permease | 0.51 | JOY50_RS19525 | upp | uracil phosphoribosyltransferase | low | > 84 |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS07675 | | ABC transporter for L-Arginine, permease component 2 (from data) | 0.55 | BPHYT_RS06415 | | uracil phosphoribosyltransferase | low | > 109 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF4692 | | Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) | 0.67 | GFF1179 | | Uracil phosphoribosyltransferase (EC 2.4.2.9) | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.34 | ABCV34_RS02180 | | ABC transporter permease | 0.51 | ABCV34_RS15380 | | uracil phosphoribosyltransferase | low | > 48 |
Not shown: 0 genomes with orthologs for Atu2364 only; 65 genomes with orthologs for Atu0135 only