Conservation of cofitness between Sama_3073 and Sama_2084 in Shewanella amazonensis SB2B

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_3073 serine protease (RefSeq) 1.0 Sama_2084 hypothetical protein (RefSeq) 0.45 11
Shewanella sp. ANA-3 0.81 Shewana3_0690 peptidase Do (RefSeq) 0.55 Shewana3_2529 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.80 SO3942 serine protease, HtrA/DegQ/DegS family (NCBI ptt file) 0.56 SO2746 conserved hypothetical protein (NCBI ptt file) — —
Shewanella loihica PV-4 0.77 Shew_3296 protease Do (RefSeq) 0.57 Shew_1529 TPR repeat-containing protein (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_03020 serine endoprotease DegQ 0.32 CSW01_09185 tol-pal system protein YbgF low > 62
Alteromonas macleodii MIT1002 0.59 MIT1002_00842 Periplasmic pH-dependent serine endoprotease DegQ precursor 0.42 MIT1002_01340 tol-pal system protein YbgF 0.70 24
Dickeya dadantii 3937 0.59 DDA3937_RS01605 serine endoprotease DegQ 0.29 DDA3937_RS06525 cell division protein CpoB 0.40 66
Dickeya dianthicola 67-19 0.59 HGI48_RS01520 serine endoprotease DegQ 0.30 HGI48_RS06570 cell division protein CpoB 0.60 2
Dickeya dianthicola ME23 0.59 DZA65_RS01585 serine endoprotease DegQ 0.29 DZA65_RS06920 cell division protein CpoB 0.57 41
Pectobacterium carotovorum WPP14 0.57 HER17_RS19985 serine endoprotease DegQ 0.32 HER17_RS14855 cell division protein CpoB low > 75
Serratia liquefaciens MT49 0.56 IAI46_22390 serine endoprotease DegQ 0.29 IAI46_06345 cell division protein CpoB low > 86
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3283 periplasmic serine protease, Do/DeqQ family 0.29 EX28DRAFT_2249 tol-pal system protein YbgF low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_04138 Periplasmic pH-dependent serine endoprotease DegQ 0.29 MPMX20_01371 Cell division coordinator CpoB low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF2974 Outer membrane stress sensor protease DegQ, serine protease 0.32 GFF4656 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain 0.45 73
Klebsiella michiganensis M5al 0.55 BWI76_RS25365 serine endoprotease DegQ 0.30 BWI76_RS08545 cell division protein CpoB low > 92
Klebsiella pneumoniae MKP103 0.55 KDGMDA_06190 serine endoprotease DegQ 0.28 KDGMDA_16800 cell division protein CpoB low > 95
Rahnella sp. WP5 0.54 EX31_RS12475 Do family serine endopeptidase 0.32 EX31_RS23505 cell division protein CpoB low > 89
Pantoea agglomerans CFBP13505 P0401 0.54 PagCFBP13505_RS09425 serine endoprotease DegQ 0.28 PagCFBP13505_RS03630 cell division protein CpoB low > 74
Escherichia fergusonii Becca 0.54 EFB2_00596 Periplasmic pH-dependent serine endoprotease DegQ 0.32 EFB2_03364 Cell division coordinator CpoB low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00470 Periplasmic pH-dependent serine endoprotease DegQ 0.33 OHPLBJKB_02971 Cell division coordinator CpoB low > 74
Escherichia coli ECOR27 0.54 NOLOHH_09605 degQ serine endoprotease DegQ 0.33 NOLOHH_23230 cpoB cell division protein CpoB low > 76
Escherichia coli ECRC62 0.54 BNILDI_01930 degQ serine endoprotease DegQ 0.33 BNILDI_21225 cpoB cell division protein CpoB low > 75
Escherichia coli BW25113 0.54 b3234 degQ serine endoprotease, periplasmic (NCBI) 0.33 b0742 ybgF hypothetical protein (NCBI) low > 76
Escherichia coli BL21 0.54 ECD_03094 serine endoprotease, periplasmic 0.33 ECD_00702 periplasmic TolA-binding protein low > 61
Pantoea sp. MT58 0.54 IAI47_17260 serine endoprotease DegQ 0.28 IAI47_13675 cell division protein CpoB low > 76
Escherichia coli ECOR38 0.54 HEPCGN_16675 degQ serine endoprotease DegQ 0.33 HEPCGN_01475 cpoB cell division protein CpoB low > 88
Escherichia coli ECRC102 0.53 NIAGMN_15565 degQ serine endoprotease DegQ 0.32 NIAGMN_04845 cpoB cell division protein CpoB low > 80
Escherichia coli ECRC99 0.53 KEDOAH_10345 degQ serine endoprotease DegQ 0.32 KEDOAH_21170 cpoB cell division protein CpoB — —
Escherichia coli ECRC101 0.53 MCAODC_08325 degQ serine endoprotease DegQ 0.32 MCAODC_26015 cpoB cell division protein CpoB low > 88
Escherichia coli ECRC98 0.53 JDDGAC_21430 degQ serine endoprotease DegQ 0.32 JDDGAC_10450 cpoB cell division protein CpoB low > 87
Escherichia coli ECRC100 0.53 OKFHMN_17805 degQ serine endoprotease DegQ 0.32 OKFHMN_06795 cpoB cell division protein CpoB low > 79
Erwinia tracheiphila SCR3 0.53 LU632_RS21355 Do family serine endopeptidase 0.35 LU632_RS16020 cpoB cell division protein CpoB low > 74
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_13665 serine endoprotease DegQ 0.35 IJEDHG_02075 cpoB cell division protein CpoB low > 61
Erwinia amylovora T8 0.50 OLJFJH_06990 serine endoprotease DegQ 0.34 OLJFJH_16900 cell division protein CpoB low > 58
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS17545 DegQ family serine endoprotease 0.13 ABZR86_RS10795 tol-pal system protein YbgF low > 74
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.4948.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 0.17 Xcc-8004.1448.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain low > 74
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_00150 Periplasmic serine endoprotease DegP-like 0.12 OKGIIK_01885 ybgF tol-pal system protein YbgF low > 53
Rhodanobacter sp000427505 FW510-R12 0.39 LRK53_RS17720 Do family serine endopeptidase 0.13 LRK53_RS05165 tol-pal system protein YbgF low > 59
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS06430 Do family serine endopeptidase 0.13 LRK54_RS04865 tol-pal system protein YbgF low > 59
Rhodanobacter denitrificans MT42 0.38 LRK55_RS06175 Do family serine endopeptidase 0.13 LRK55_RS04645 tol-pal system protein YbgF low > 63
Lysobacter sp. OAE881 0.38 ABIE51_RS03265 trypsin-like peptidase domain-containing protein 0.13 ABIE51_RS05095 tol-pal system protein YbgF low > 62
Methylophilus sp. DMC18 0.30 GFF1457 Periplasmic pH-dependent serine endoprotease DegQ 0.12 GFF2334 Cell division coordinator CpoB 0.57 15
Pseudomonas sp. RS175 0.30 PFR28_00693 Periplasmic serine endoprotease DegP 0.16 PFR28_03405 Cell division coordinator CpoB 0.39 9
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU1468 htrA peptidase/PDZ domain protein (TIGR) 0.16 DVU2070 TPR domain protein (TIGR) low > 55
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_2183 periplasmic serine protease, Do/DeqQ family 0.22 B158DRAFT_1143 tol-pal system protein YbgF low > 40
Acinetobacter radioresistens SK82 0.27 MPMX26_02161 Periplasmic pH-dependent serine endoprotease DegQ 0.16 MPMX26_01306 Cell division coordinator CpoB low > 36
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1382 periplasmic serine protease, Do/DeqQ family 0.11 Ga0059261_2512 Uncharacterized protein conserved in bacteria low > 68

Not shown: 42 genomes with orthologs for Sama_3073 only; 11 genomes with orthologs for Sama_2084 only