Conservation of cofitness between Shew_2451 and Shew_3807 in Shewanella loihica PV-4

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2451 patatin (RefSeq) 1.0 Shew_3807 peptidase M23B (RefSeq) 0.37 12
Shewanella amazonensis SB2B 0.64 Sama_1274 hypothetical protein (RefSeq) 0.66 Sama_0059 M24/M37 family peptidase (RefSeq) low > 62
Shewanella sp. ANA-3 0.58 Shewana3_2605 patatin (RefSeq) 0.71 Shewana3_0050 peptidase M23B (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO2836 conserved hypothetical protein (NCBI ptt file) 0.67 SO0048 peptidase, M23/M37 family (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.41 HER17_RS11055 patatin-like phospholipase RssA 0.31 HER17_RS20750 murein hydrolase activator EnvC low > 75
Klebsiella pneumoniae MKP103 0.41 KDGMDA_24510 patatin-like phospholipase RssA 0.28 KDGMDA_07920 murein hydrolase activator EnvC low > 95
Dickeya dadantii 3937 0.40 DDA3937_RS10335 patatin-like phospholipase RssA 0.30 DDA3937_RS20420 murein hydrolase activator EnvC low > 74
Dickeya dianthicola 67-19 0.40 HGI48_RS10345 patatin-like phospholipase RssA 0.29 HGI48_RS00780 murein hydrolase activator EnvC low > 71
Dickeya dianthicola ME23 0.40 DZA65_RS10820 patatin-like phospholipase RssA 0.29 DZA65_RS00835 murein hydrolase activator EnvC low > 75
Pantoea sp. MT58 0.39 IAI47_09020 patatin-like phospholipase RssA 0.26 IAI47_00720 murein hydrolase activator EnvC low > 76
Escherichia coli ECOR38 0.39 HEPCGN_25040 rssA patatin-like phospholipase RssA 0.29 HEPCGN_14570 envC murein hydrolase activator EnvC 0.41 49
Escherichia coli ECOR27 0.39 NOLOHH_20470 rssA patatin-like phospholipase RssA 0.30 NOLOHH_07610 envC murein hydrolase activator EnvC low > 76
Escherichia coli ECRC100 0.39 OKFHMN_28580 rssA patatin-like phospholipase RssA 0.30 OKFHMN_15730 envC murein hydrolase activator EnvC low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_02451 putative NTE family protein 0.30 OHPLBJKB_00086 Murein hydrolase activator EnvC low > 74
Escherichia coli Nissle 1917 0.39 ECOLIN_RS07470 patatin-like phospholipase RssA 0.30 ECOLIN_RS20620 murein hydrolase activator EnvC low > 55
Escherichia coli BL21 0.39 ECD_01210 putative patatin-like family phospholipase 0.30 ECD_03471 activator of AmiB,C murein hydrolases, septal ring factor — —
Escherichia coli ECRC98 0.39 JDDGAC_05995 rssA patatin-like phospholipase RssA 0.30 JDDGAC_19355 envC murein hydrolase activator EnvC low > 87
Escherichia coli BW25113 0.39 b1234 rssA conserved protein (RefSeq) 0.30 b3613 yibP putative membrane protein (VIMSS) low > 76
Escherichia coli ECRC62 0.39 BNILDI_18625 rssA patatin-like phospholipase RssA 0.30 BNILDI_03905 envC murein hydrolase activator EnvC low > 75
Escherichia coli ECRC101 0.39 MCAODC_21680 rssA patatin-like phospholipase RssA 0.30 MCAODC_06240 envC murein hydrolase activator EnvC low > 88
Pantoea agglomerans CFBP13505 P0401 0.39 PagCFBP13505_RS02860 patatin-like phospholipase RssA 0.26 PagCFBP13505_RS18625 murein hydrolase activator EnvC low > 74
Escherichia coli ECRC99 0.39 KEDOAH_25575 rssA patatin-like phospholipase RssA 0.30 KEDOAH_12420 envC murein hydrolase activator EnvC — —
Escherichia fergusonii Becca 0.39 EFB2_02692 putative NTE family protein 0.30 EFB2_00197 Murein hydrolase activator EnvC low > 86
Escherichia coli ECRC102 0.39 NIAGMN_27655 rssA patatin-like phospholipase RssA 0.30 NIAGMN_13490 envC murein hydrolase activator EnvC low > 80
Rahnella sp. WP5 0.39 EX31_RS10105 patatin-like phospholipase RssA 0.29 EX31_RS14365 murein hydrolase activator EnvC low > 89
Serratia liquefaciens MT49 0.39 IAI46_14255 patatin-like phospholipase RssA 0.29 IAI46_24715 murein hydrolase activator EnvC low > 86
Klebsiella michiganensis M5al 0.39 BWI76_RS17280 patatin family protein 0.29 BWI76_RS27235 murein hydrolase activator EnvC low > 92
Enterobacter asburiae PDN3 0.39 EX28DRAFT_0860 Predicted esterase of the alpha-beta hydrolase superfamily 0.31 EX28DRAFT_3864 Membrane-bound metallopeptidase low > 76
Enterobacter sp. TBS_079 0.39 MPMX20_02594 putative NTE family protein 0.31 MPMX20_00120 Murein hydrolase activator EnvC low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF2754 UPF0028 protein YchK 0.29 GFF397 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP — —
Alteromonas macleodii MIT1002 0.38 MIT1002_02140 NTE family protein RssA 0.38 MIT1002_00489 Septal ring factor low > 70
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_2206 UPF0028 protein YchK 0.29 PfGW456L13_354 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP low > 87
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_310 UPF0028 protein YchK 0.30 Pf1N1B4_1618 Lipoprotein NlpD — —
Pseudomonas simiae WCS417 0.27 PS417_08310 alpha/beta hydrolase 0.31 PS417_01600 peptidase M23 low > 88
Pseudomonas sp. S08-1 0.27 OH686_01880 Bacterial patatin-like phospholipase domain containing protein 0.31 OH686_14650 Murein hydrolase activator EnvC low > 80
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS08250 alpha/beta hydrolase 0.31 PFLU_RS01650 murein hydrolase activator EnvC low > 109
Pseudomonas fluorescens SBW25 0.27 PFLU_RS08250 alpha/beta hydrolase 0.31 PFLU_RS01650 murein hydrolase activator EnvC low > 109
Pseudomonas putida KT2440 0.27 PP_2305 conserved protein of unknown function 0.28 PP_5057 Peptidase, M23/M37 family low > 96
Pseudomonas lactucae CFBP13502 0.27 GEMAOFIL_01791 putative NTE family protein 0.31 GEMAOFIL_00540 Murein hydrolase activator EnvC low > 93
Pseudomonas sp. DMC3 0.26 GFF4641 putative NTE family protein 0.30 GFF4090 Murein hydrolase activator EnvC low > 89
Pseudomonas sp. BP01 0.26 JOY50_RS25890 patatin-like phospholipase family protein 0.28 JOY50_RS09415 murein hydrolase activator EnvC — —
Pseudomonas stutzeri RCH2 0.26 Psest_2463 Predicted esterase of the alpha-beta hydrolase superfamily 0.30 Psest_0161 Membrane-bound metallopeptidase low > 67
Pseudomonas segetis P6 0.26 MPMX49_02675 putative NTE family protein 0.31 MPMX49_04295 Murein hydrolase activator EnvC low > 75
Pseudomonas sp. SVBP6 0.26 COO64_RS09710 patatin-like phospholipase family protein 0.29 COO64_RS13290 murein hydrolase activator EnvC low > 93
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_18940 alpha/beta hydrolase 0.30 AO353_12110 peptidase M23 low > 101
Pseudomonas aeruginosa PA14 0.25 IKLFDK_07865 alpha/beta hydrolase 0.31 IKLFDK_27840 peptidase M23 low > 100
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_15480 Serine protease 0.17 OKGIIK_12915 Peptidase M23 low > 53
Pseudomonas sp. RS175 0.25 PFR28_00944 putative NTE family protein 0.31 PFR28_04937 Murein hydrolase activator EnvC low > 88
Rhodanobacter sp000427505 FW510-R12 0.25 LRK53_RS02520 patatin-like phospholipase family protein 0.17 LRK53_RS03745 peptidoglycan DD-metalloendopeptidase family protein low > 59
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_2489 UPF0028 protein YchK 0.31 Pf6N2E2_3834 Lipoprotein NlpD low > 103
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_03290 alpha/beta hydrolase 0.31 AO356_09775 peptidase M23 low > 104
Rhodanobacter denitrificans MT42 0.24 LRK55_RS08480 patatin-like phospholipase family protein 0.17 LRK55_RS10660 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.24 LRK54_RS08715 patatin-like phospholipase family protein 0.17 LRK54_RS10955 peptidoglycan DD-metalloendopeptidase family protein low > 59
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS14850 patatin-like phospholipase family protein 0.18 ABZR86_RS13355 peptidoglycan DD-metalloendopeptidase family protein low > 74
Marinobacter adhaerens HP15 0.23 HP15_1840 patatin 0.27 HP15_3006 peptidase M23B low > 73

Not shown: 16 genomes with orthologs for Shew_2451 only; 11 genomes with orthologs for Shew_3807 only