Conservation of cofitness between Shew_1541 and Shew_3469 in Shewanella loihica PV-4

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_1541 carboxylesterase (RefSeq) 1.0 Shew_3469 isopropylmalate isomerase small subunit (RefSeq) 0.54 5
Shewanella sp. ANA-3 0.74 Shewana3_1838 putative esterase (RefSeq) 0.82 Shewana3_3758 leuD isopropylmalate isomerase small subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.74 SO2055 esterase, putative (NCBI ptt file) 0.83 SO4233 leuD 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.69 B158DRAFT_0941 S-formylglutathione hydrolase 0.58 B158DRAFT_1320 3-isopropylmalate dehydratase, small subunit low > 40
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_1368 Carboxylesterase 0.58 Psyr_1984 3-isopropylmalate dehydratase, small subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_1368 Carboxylesterase 0.58 Psyr_1984 3-isopropylmalate dehydratase, small subunit low > 86
Pseudomonas sp. DMC3 0.68 GFF2078 S-formylglutathione hydrolase YeiG 0.60 GFF786 3-isopropylmalate dehydratase small subunit 1 low > 89
Shewanella amazonensis SB2B 0.67 Sama_0003 carboxylesterase (RefSeq) 0.81 Sama_0338 leuD isopropylmalate isomerase small subunit (RefSeq) low > 62
Pseudomonas sp. S08-1 0.67 OH686_18155 S-formylglutathione hydrolase 0.59 OH686_04475 3-isopropylmalate dehydratase small subunit low > 80
Pseudomonas sp. RS175 0.67 PFR28_00421 S-formylglutathione hydrolase YeiG 0.58 PFR28_02823 3-isopropylmalate dehydratase small subunit 1 low > 88
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_3109 S-formylglutathione hydrolase (EC 3.1.2.12) 0.58 Pf1N1B4_14 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Pseudomonas segetis P6 0.66 ACVTMO_RS16995 fghA S-formylglutathione hydrolase 0.58 ACVTMO_RS15225 leuD 3-isopropylmalate dehydratase small subunit low > 75
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_3043 S-formylglutathione hydrolase (EC 3.1.2.12) 0.58 Pf6N2E2_64 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 103
Pseudomonas fluorescens GW456-L13 0.66 PfGW456L13_4681 S-formylglutathione hydrolase (EC 3.1.2.12) 0.59 PfGW456L13_3947 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 87
Pseudomonas fluorescens SBW25 0.66 PFLU_RS06400 S-formylglutathione hydrolase 0.59 PFLU_RS20575 3-isopropylmalate dehydratase small subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS06400 S-formylglutathione hydrolase 0.59 PFLU_RS20575 3-isopropylmalate dehydratase small subunit low > 109
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_16585 S-formylglutathione hydrolase 0.59 AO353_20625 3-isopropylmalate dehydratase low > 101
Pseudomonas simiae WCS417 0.66 PS417_06335 S-formylglutathione hydrolase 0.59 PS417_18595 3-isopropylmalate dehydratase low > 88
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_05915 S-formylglutathione hydrolase 0.58 AO356_21405 3-isopropylmalate dehydratase low > 104
Pseudomonas lactucae CFBP13502 0.66 GEMAOFIL_01437 S-formylglutathione hydrolase YeiG 0.59 GEMAOFIL_03947 3-isopropylmalate dehydratase small subunit low > 96
Pseudomonas stutzeri RCH2 0.66 Psest_2815 S-formylglutathione hydrolase 0.59 Psest_2590 3-isopropylmalate dehydratase, small subunit low > 67
Pseudomonas sp. SVBP6 0.66 COO64_RS19765 fghA S-formylglutathione hydrolase 0.61 COO64_RS05660 leuD 3-isopropylmalate dehydratase small subunit 0.52 2
Pseudomonas putida KT2440 0.65 PP_1617 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase 0.57 PP_1986 3-isopropylmalate dehydratase small subunit low > 96
Pseudomonas sp. BP01 0.65 JOY50_RS23725 fghA S-formylglutathione hydrolase 0.57 JOY50_RS16625 leuD 3-isopropylmalate dehydratase small subunit low > 84
Pseudomonas orientalis W4I3 0.65 QF045_RS09180 S-formylglutathione hydrolase 0.59 QF045_RS20735 3-isopropylmalate dehydratase small subunit low > 93
Pseudomonas aeruginosa MRSN321 0.64 DY961_RS14835 fghA;go_function=S-formylglutathione S-formylglutathione hydrolase 0.60 DY961_RS01325 leuD;go_component=3-isopropylmalate 3-isopropylmalate dehydratase small subunit low > 100
Pseudomonas aeruginosa PUPa3 0.64 DQ20_RS42290 fghA;go_function=S-formylglutathione S-formylglutathione hydrolase 0.60 DQ20_RS34230 leuD;go_component=3-isopropylmalate 3-isopropylmalate dehydratase small subunit 0.30 62
Azospirillum brasilense Sp245 0.64 AZOBR_RS16510 S-formylglutathione hydrolase 0.49 AZOBR_RS14135 isopropylmalate isomerase 0.24 54
Pseudomonas aeruginosa PA14 0.64 IKLFDK_18525 S-formylglutathione hydrolase 0.60 IKLFDK_15875 3-isopropylmalate dehydratase small subunit low > 98
Acinetobacter radioresistens SK82 0.64 MPMX26_00882 S-formylglutathione hydrolase FrmB 0.55 MPMX26_00346 3-isopropylmalate dehydratase small subunit 1 low > 36
Acinetobacter baumannii LAC-4 0.63 RR41_RS16260 S-formylglutathione hydrolase 0.55 RR41_RS16895 3-isopropylmalate dehydratase small subunit low > 55
Dickeya dianthicola ME23 0.63 DZA65_RS09650 S-formylglutathione hydrolase 0.64 DZA65_RS19215 3-isopropylmalate dehydratase small subunit low > 75
Rhodospirillum rubrum S1H 0.63 Rru_A3406 Carboxylesterase (NCBI) 0.48 Rru_A1190 3-isopropylmalate dehydratase small subunit region (NCBI) low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF3784 S-formylglutathione hydrolase (EC 3.1.2.12) 0.64 GFF167 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 78
Dickeya dianthicola 67-19 0.63 HGI48_RS09345 S-formylglutathione hydrolase 0.64 HGI48_RS18070 3-isopropylmalate dehydratase small subunit low > 71
Enterobacter sp. TBS_079 0.62 MPMX20_03125 S-formylglutathione hydrolase YeiG 0.61 MPMX20_00766 3-isopropylmalate dehydratase small subunit 1 low > 85
Rahnella sp. WP5 0.62 EX31_RS18720 S-formylglutathione hydrolase 0.63 EX31_RS03695 3-isopropylmalate dehydratase small subunit low > 89
Dickeya dadantii 3937 0.62 DDA3937_RS09320 S-formylglutathione hydrolase 0.65 DDA3937_RS18130 3-isopropylmalate dehydratase small subunit low > 74
Erwinia tracheiphila SCR3 0.62 LU632_RS17275 fghA S-formylglutathione hydrolase 0.54 LU632_RS02865 leuD 3-isopropylmalate dehydratase small subunit low > 73
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_25845 fghA S-formylglutathione hydrolase 0.54 IJEDHG_06010 leuD 3-isopropylmalate dehydratase small subunit low > 61
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.984.1 S-formylglutathione hydrolase (EC 3.1.2.12) 0.57 Xcc-8004.1050.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 74
Alteromonas macleodii MIT1002 0.62 MIT1002_03419 S-formylglutathione hydrolase YeiG 0.60 MIT1002_00946 3-isopropylmalate dehydratase small subunit 1 low > 70
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS00495 S-formylglutathione hydrolase 0.53 BPHYT_RS33905 3-isopropylmalate dehydratase small subunit low > 109
Klebsiella michiganensis M5al 0.62 BWI76_RS19670 S-formylglutathione hydrolase 0.64 BWI76_RS04665 3-isopropylmalate dehydratase small subunit low > 92
Klebsiella pneumoniae MKP103 0.61 KDGMDA_26630 S-formylglutathione hydrolase 0.63 KDGMDA_12895 3-isopropylmalate dehydratase small subunit low > 95
Lysobacter sp. OAE881 0.61 ABIE51_RS18920 S-formylglutathione hydrolase 0.43 ABIE51_RS17580 3-isopropylmalate dehydratase small subunit low > 62
Pectobacterium carotovorum WPP14 0.61 HER17_RS12795 S-formylglutathione hydrolase 0.64 HER17_RS03070 3-isopropylmalate dehydratase small subunit low > 75
Pantoea sp. MT58 0.61 IAI47_06700 S-formylglutathione hydrolase 0.61 IAI47_16015 3-isopropylmalate dehydratase small subunit low > 76
Serratia liquefaciens MT49 0.60 IAI46_07880 S-formylglutathione hydrolase 0.64 IAI46_03340 3-isopropylmalate dehydratase small subunit low > 87
Pantoea agglomerans CFBP13505 P0401 0.60 PagCFBP13505_RS00800 S-formylglutathione hydrolase 0.61 PagCFBP13505_RS12985 3-isopropylmalate dehydratase small subunit low > 74
Escherichia coli ECRC98 0.60 JDDGAC_27470 yeiG S-formylglutathione hydrolase 0.62 JDDGAC_14325 leuD 3-isopropylmalate dehydratase small subunit low > 87
Escherichia coli ECRC100 0.60 OKFHMN_23510 yeiG S-formylglutathione hydrolase 0.62 OKFHMN_10730 leuD 3-isopropylmalate dehydratase small subunit low > 79
Escherichia fergusonii Becca 0.60 EFB2_01702 S-formylglutathione hydrolase YeiG 0.62 EFB2_03974 3-isopropylmalate dehydratase small subunit low > 86
Escherichia coli ECOR27 0.60 NOLOHH_15085 yeiG S-formylglutathione hydrolase 0.63 NOLOHH_03075 leuD 3-isopropylmalate dehydratase small subunit low > 76
Escherichia coli ECRC62 0.60 BNILDI_14005 yeiG S-formylglutathione hydrolase 0.63 BNILDI_08535 leuD 3-isopropylmalate dehydratase small subunit low > 75
Escherichia coli ECRC101 0.60 MCAODC_14560 yeiG S-formylglutathione hydrolase 0.62 MCAODC_01245 leuD 3-isopropylmalate dehydratase small subunit low > 87
Escherichia coli BW25113 0.60 b2154 yeiG predicted esterase (NCBI) 0.63 b0071 leuD isopropylmalate isomerase small subunit (NCBI) low > 76
Escherichia coli BL21 0.60 ECD_02083 S-formylglutathione hydrolase 0.63 ECD_00073 3-isopropylmalate dehydratase small subunit low > 61
Escherichia coli ECRC99 0.60 KEDOAH_04675 yeiG S-formylglutathione hydrolase 0.62 KEDOAH_17425 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECRC102 0.60 NIAGMN_21275 yeiG S-formylglutathione hydrolase 0.62 NIAGMN_08580 leuD 3-isopropylmalate dehydratase small subunit low > 80
Escherichia coli Nissle 1917 0.60 ECOLIN_RS12610 S-formylglutathione hydrolase 0.62 ECOLIN_RS00385 3-isopropylmalate dehydratase small subunit low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_01557 S-formylglutathione hydrolase YeiG 0.63 OHPLBJKB_03586 3-isopropylmalate dehydratase small subunit low > 74
Escherichia coli ECOR38 0.60 HEPCGN_22780 yeiG S-formylglutathione hydrolase 0.62 HEPCGN_08710 leuD 3-isopropylmalate dehydratase small subunit low > 88
Enterobacter asburiae PDN3 0.60 EX28DRAFT_0402 S-formylglutathione hydrolase 0.61 EX28DRAFT_3667 3-isopropylmalate dehydratase, small subunit low > 76
Synechococcus elongatus PCC 7942 0.60 Synpcc7942_0458 fghA Carboxylesterase 0.28 Synpcc7942_2548 leuD isopropylmalate isomerase small subunit
Azospirillum sp. SherDot2 0.60 MPMX19_05325 S-formylglutathione hydrolase YeiG 0.51 MPMX19_00606 3-isopropylmalate dehydratase small subunit 1 low > 112
Erwinia amylovora T8 0.59 OLJFJH_11820 S-formylglutathione hydrolase 0.52 OLJFJH_01300 3-isopropylmalate dehydratase small subunit low > 58
Synechocystis sp000284455 PCC 6803 0.59 SGL_RS04895 S-formylglutathione hydrolase 0.28 SGL_RS10800 3-isopropylmalate dehydratase small subunit
Castellaniella sp019104865 MT123 0.59 ABCV34_RS09040 S-formylglutathione hydrolase 0.55 ABCV34_RS04285 3-isopropylmalate dehydratase small subunit low > 48
Marinobacter adhaerens HP15 0.58 HP15_3909 carboxylesterase 0.57 HP15_1833 isopropylmalate isomerase small subunit low > 73
Sinorhizobium meliloti 1021 0.55 SM_b20171 carboxylesterase 0.49 SMc03795 isopropylmalate isomerase small subunit low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF3319 S-formylglutathione hydrolase (EC 3.1.2.12) 0.57 GFF3361 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 90
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_09695 fghA S-formylglutathione hydrolase 0.43 OKGIIK_13590 leuD 3-isopropylmalate dehydratase small subunit low > 53
Rhodanobacter sp000427505 FW510-R12 0.54 LRK53_RS07305 S-formylglutathione hydrolase 0.46 LRK53_RS16370 3-isopropylmalate dehydratase small subunit low > 59
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02400 S-formylglutathione hydrolase 0.43 LRK55_RS09970 3-isopropylmalate dehydratase small subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS02645 S-formylglutathione hydrolase 0.43 LRK54_RS10330 3-isopropylmalate dehydratase small subunit low > 59
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS08985 S-formylglutathione hydrolase 0.43 ABZR86_RS15955 3-isopropylmalate dehydratase small subunit low > 74
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS13610 S-formylglutathione hydrolase 0.52 HSERO_RS16505 3-isopropylmalate dehydratase small subunit low > 78
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_02600 S-formylglutathione hydrolase 0.47 CCNA_00195 3-isopropylmalate dehydratase small subunit low > 67
Caulobacter crescentus NA1000 0.53 CCNA_02600 S-formylglutathione hydrolase 0.47 CCNA_00195 3-isopropylmalate dehydratase small subunit low > 66
Paraburkholderia graminis OAS925 0.53 ABIE53_003401 S-formylglutathione hydrolase 0.53 ABIE53_004803 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit low > 113
Phaeobacter inhibens DSM 17395 0.52 PGA1_c31600 S-formylglutathione hydrolase FghA 0.47 PGA1_c29790 3-isopropylmalate dehydratase small subunit low > 62
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_04165 S-formylglutathione hydrolase 0.54 H281DRAFT_06073 3-isopropylmalate dehydratase, small subunit low > 103
Ralstonia solanacearum PSI07 0.52 RPSI07_RS20970 S-formylglutathione hydrolase 0.57 RPSI07_RS14700 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS12340 S-formylglutathione hydrolase 0.56 RALBFv3_RS02615 3-isopropylmalate dehydratase small subunit low > 76
Ralstonia solanacearum UW163 0.51 UW163_RS01265 S-formylglutathione hydrolase 0.56 UW163_RS11110 3-isopropylmalate dehydratase small subunit
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS02560 S-formylglutathione hydrolase 0.54 QEN71_RS17615 3-isopropylmalate dehydratase small subunit low > 153
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS00435 S-formylglutathione hydrolase 0.38 A4249_RS10000 3-isopropylmalate dehydratase small subunit low > 48
Sphingobium sp. HT1-2 0.51 GFF1436 S-formylglutathione hydrolase (EC 3.1.2.12) 0.37 GFF2628 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 95
Ralstonia solanacearum GMI1000 0.51 RS_RS03025 S-formylglutathione hydrolase 0.56 RS_RS09995 3-isopropylmalate dehydratase small subunit
Acidovorax sp. GW101-3H11 0.51 Ac3H11_3164 S-formylglutathione hydrolase (EC 3.1.2.12) 0.53 Ac3H11_1527 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 79
Dinoroseobacter shibae DFL-12 0.51 Dshi_0474 S-formylglutathione hydrolase (RefSeq) 0.51 Dshi_0083 3-isopropylmalate dehydratase, small subunit (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_1822 S-formylglutathione hydrolase 0.36 Ga0059261_4225 3-isopropylmalate dehydratase, small subunit low > 68
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS28645 S-formylglutathione hydrolase 0.56 RR42_RS14390 3-isopropylmalate dehydratase low > 128
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS08280 S-formylglutathione hydrolase 0.56 ABZR87_RS14535 3-isopropylmalate dehydratase small subunit low > 80
Agrobacterium fabrum C58 0.49 Atu1476 esterase D 0.48 Atu2790 3-isopropylmalate dehydratase, small subunit low > 89
Rhizobium sp. OAE497 0.49 ABIE40_RS09880 S-formylglutathione hydrolase 0.46 ABIE40_RS19040 3-isopropylmalate dehydratase small subunit low > 107
Variovorax sp. SCN45 0.48 GFF2943 S-formylglutathione hydrolase (EC 3.1.2.12) 0.55 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 127
Variovorax sp. OAS795 0.48 ABID97_RS10225 S-formylglutathione hydrolase 0.54 ABID97_RS08460 3-isopropylmalate dehydratase small subunit
Bosea sp. OAE506 0.46 ABIE41_RS09630 S-formylglutathione hydrolase 0.48 ABIE41_RS11640 3-isopropylmalate dehydratase small subunit
Parabacteroides merdae CL09T00C40 0.09 HMPREF1078_RS09460 alpha/beta hydrolase-fold protein 0.37 HMPREF1078_RS16655 3-isopropylmalate dehydratase small subunit low > 61

Not shown: 0 genomes with orthologs for Shew_1541 only; 18 genomes with orthologs for Shew_3469 only