Conservation of cofitness between Shew_2148 and Shew_2061 in Shewanella loihica PV-4

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2148 hypothetical protein (RefSeq) 1.0 Shew_2061 radical SAM domain-containing protein (RefSeq) 0.42 19
Shewanella amazonensis SB2B 0.90 Sama_1575 hypothetical protein (RefSeq) 0.73 Sama_1825 radical activating enzyme (RefSeq) low > 62
Shewanella oneidensis MR-1 0.90 SO1977 conserved hypothetical protein (NCBI ptt file) 0.75 SO2501 radical activating enzyme (NCBI ptt file) — —
Shewanella sp. ANA-3 0.89 Shewana3_2470 hypothetical protein (RefSeq) 0.76 Shewana3_2163 radical activating enzyme (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_19345 YccF domain-containing protein 0.62 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE low > 62
Desulfovibrio vulgaris Hildenborough JW710 0.61 DVU1762 membrane protein, putative (TIGR) 0.15 DVU2658 conserved hypothetical protein (TIGR) low > 55
Caulobacter crescentus NA1000 Δfur 0.51 CCNA_02196 hypothetical protein 0.16 CCNA_03261 queuosine biosynthesis protein QueE low > 67
Caulobacter crescentus NA1000 0.51 CCNA_02196 hypothetical protein 0.16 CCNA_03261 queuosine biosynthesis protein QueE low > 66
Rhodopseudomonas palustris CGA009 0.49 TX73_003990 YccF domain-containing protein 0.17 TX73_006110 7-carboxy-7-deazaguanine synthase low > 86
Azospirillum brasilense Sp245 0.41 AZOBR_RS12470 membrane protein 0.17 AZOBR_RS04155 radical SAM protein — —
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS11505 YccF domain-containing protein 0.19 ABI39_RS10600 radical SAM protein low > 72
Phocaeicola vulgatus CL09T03C04 0.35 HMPREF1058_RS15540 YccF domain-containing protein 0.20 HMPREF1058_RS14880 radical SAM protein low > 67
Klebsiella pneumoniae MKP103 0.34 KDGMDA_18220 YccF domain-containing protein 0.61 KDGMDA_03310 7-carboxy-7-deazaguanine synthase QueE low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF3252 Inner membrane protein YccF 0.61 GFF4831 Queuosine Biosynthesis QueE Radical SAM low > 78
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS11245 YccF domain-containing protein 0.19 HMPREF1078_RS00750 radical SAM protein low > 61
Serratia liquefaciens MT49 0.34 IAI46_08895 YccF domain-containing protein 0.61 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE low > 87
Erwinia tracheiphila SCR3 0.34 LU632_RS10045 YccF domain-containing protein 0.60 LU632_RS06390 queE 7-carboxy-7-deazaguanine synthase QueE low > 73
Rahnella sp. WP5 0.33 EX31_RS18020 YccF domain-containing protein 0.61 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE low > 89
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS13940 YccF domain-containing protein 0.20 HMPREF1181_RS13885 radical SAM protein low > 56
Bacteroides ovatus ATCC 8483 0.33 BACOVA_05400 hypothetical protein 0.21 BACOVA_05261 radical SAM domain protein low > 96
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS05000 YccF domain-containing protein 0.16 A4249_RS08695 7-carboxy-7-deazaguanine synthase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS08440 YccF domain-containing protein 0.61 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE low > 75
Enterobacter sp. TBS_079 0.33 MPMX20_01611 Inner membrane protein YccF 0.60 MPMX20_03645 7-carboxy-7-deazaguanine synthase low > 85
Erwinia amylovora T8 0.33 OLJFJH_15915 YccF domain-containing protein 0.61 OLJFJH_09270 7-carboxy-7-deazaguanine synthase QueE low > 58
Klebsiella michiganensis M5al 0.33 BWI76_RS09990 hypothetical protein 0.61 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE low > 92
Dickeya dianthicola 67-19 0.32 HGI48_RS15300 YccF domain-containing protein 0.58 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE low > 71
Dickeya dianthicola ME23 0.32 DZA65_RS16125 YccF domain-containing protein 0.58 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE low > 75
Escherichia coli ECOR27 0.32 NOLOHH_21770 yccF YccF domain-containing protein 0.61 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE low > 76
Enterobacter asburiae PDN3 0.32 EX28DRAFT_1982 Predicted membrane protein 0.60 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE low > 76
Escherichia coli ECOR38 0.32 HEPCGN_23305 yccF YccF domain-containing protein 0.61 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE low > 88
Escherichia fergusonii Becca 0.32 EFB2_03110 Inner membrane protein YccF 0.61 EFB2_01141 7-carboxy-7-deazaguanine synthase low > 86
Escherichia coli BL21 0.32 ECD_00965 DUF307 family inner membrane protein 0.61 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis — —
Escherichia coli Nissle 1917 0.32 ECOLIN_RS05050 YccF domain-containing protein 0.61 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE low > 55
Dickeya dadantii 3937 0.32 DDA3937_RS15225 YccF domain-containing protein 0.61 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_02705 Inner membrane protein YccF 0.61 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase low > 74
Escherichia coli BW25113 0.32 b0961 yccF conserved inner membrane protein (NCBI) 0.61 b2777 ygcF hypothetical protein (NCBI) low > 76
Escherichia coli ECRC62 0.32 BNILDI_19935 yccF YccF domain-containing protein 0.61 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE low > 75
Pantoea agglomerans CFBP13505 P0401 0.32 PagCFBP13505_RS04705 YccF domain-containing protein 0.61 PagCFBP13505_RS16825 7-carboxy-7-deazaguanine synthase QueE low > 74
Escherichia coli ECRC102 0.32 NIAGMN_02935 yccF YccF domain-containing protein 0.61 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC99 0.32 KEDOAH_22520 yccF YccF domain-containing protein 0.61 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE — —
Escherichia coli ECRC101 0.32 MCAODC_24605 yccF YccF domain-containing protein 0.61 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE low > 87
Escherichia coli ECRC98 0.32 JDDGAC_08825 yccF YccF domain-containing protein 0.61 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE low > 87
Escherichia coli ECRC100 0.32 OKFHMN_05215 yccF YccF domain-containing protein 0.61 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.45 50
Pantoea sp. MT58 0.32 IAI47_12625 YccF domain-containing protein 0.60 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE low > 76
Bacteroides thetaiotaomicron VPI-5482 0.30 BT4608 conserved hypothetical protein (NCBI ptt file) 0.21 BT4454 conserved hypothetical protein (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS22945 hypothetical protein 0.22 CA265_RS08930 7-carboxy-7-deazaguanine synthase QueE low > 88
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_0561 Predicted membrane protein 0.15 B158DRAFT_1144 Organic radical activating enzymes low > 40

Not shown: 3 genomes with orthologs for Shew_2148 only; 52 genomes with orthologs for Shew_2061 only