Conservation of cofitness between SO2432 and SO4757 in Shewanella oneidensis MR-1

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO2432 conserved hypothetical protein TIGR01033 (NCBI ptt file) 1.0 SO4757 gidB glucose-inhibited division protein B (NCBI ptt file) 0.23 18
Shewanella sp. ANA-3 0.99 Shewana3_1954 hypothetical protein (RefSeq) 0.96 Shewana3_0001 gidB 16S rRNA methyltransferase GidB (RefSeq) low > 73
Shewanella loihica PV-4 0.85 Shew_2078 hypothetical protein (RefSeq) 0.80 Shew_3855 gidB glucose-inhibited division protein B (RefSeq) — —
Shewanella amazonensis SB2B 0.80 Sama_1842 hypothetical protein (RefSeq) 0.71 Sama_3654 gidB 16S rRNA methyltransferase GidB (RefSeq) low > 62
Dickeya dadantii 3937 0.76 DDA3937_RS10065 YebC/PmpR family DNA-binding transcriptional regulator 0.57 DDA3937_RS21600 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.37 13
Pectobacterium carotovorum WPP14 0.76 HER17_RS11855 YebC/PmpR family DNA-binding transcriptional regulator 0.57 HER17_RS21605 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 75
Dickeya dianthicola 67-19 0.75 HGI48_RS10095 YebC/PmpR family DNA-binding transcriptional regulator 0.58 HGI48_RS21385 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.42 44
Dickeya dianthicola ME23 0.75 DZA65_RS10510 YebC/PmpR family DNA-binding transcriptional regulator 0.57 DZA65_RS22365 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 75
Rahnella sp. WP5 0.73 EX31_RS11685 YebC/PmpR family DNA-binding transcriptional regulator 0.61 EX31_RS06135 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 89
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13505_RS02315 YebC/PmpR family DNA-binding transcriptional regulator 0.60 PagCFBP13505_RS19040 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 74
Serratia liquefaciens MT49 0.73 IAI46_14635 YebC/PmpR family DNA-binding transcriptional regulator 0.60 IAI46_25115 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 87
Pantoea sp. MT58 0.72 IAI47_08435 YebC/PmpR family DNA-binding transcriptional regulator 0.61 IAI47_00295 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 76
Erwinia amylovora T8 0.72 OLJFJH_12845 YebC/PmpR family DNA-binding transcriptional regulator 0.58 OLJFJH_05315 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 58
Enterobacter asburiae PDN3 0.72 EX28DRAFT_0693 DNA-binding regulatory protein, YebC/PmpR family 0.60 EX28DRAFT_4016 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 76
Escherichia fergusonii Becca 0.71 EFB2_02078 putative transcriptional regulatory protein YebC 0.59 EFB2_04893 Ribosomal RNA small subunit methyltransferase G low > 86
Escherichia coli ECOR38 0.71 HEPCGN_04665 putative transcriptional regulatory protein YebC 0.59 HEPCGN_13505 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01864 putative transcriptional regulatory protein YebC 0.59 OHPLBJKB_04313 Ribosomal RNA small subunit methyltransferase G low > 74
Escherichia coli ECRC100 0.71 OKFHMN_26255 putative transcriptional regulatory protein YebC 0.59 OKFHMN_14790 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 79
Escherichia coli ECOR27 0.71 NOLOHH_16700 putative transcriptional regulatory protein YebC 0.59 NOLOHH_06925 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 76
Escherichia coli ECRC101 0.71 MCAODC_19150 putative transcriptional regulatory protein YebC 0.59 MCAODC_05295 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 87
Escherichia coli Nissle 1917 0.71 ECOLIN_RS10380 YebC/PmpR family DNA-binding transcriptional regulator 0.59 ECOLIN_RS21510 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 55
Escherichia coli ECRC99 0.71 KEDOAH_01850 putative transcriptional regulatory protein YebC 0.59 KEDOAH_13360 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Escherichia coli ECRC98 0.71 JDDGAC_00830 putative transcriptional regulatory protein YebC 0.59 JDDGAC_18410 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 87
Enterobacter sp. TBS_079 0.71 MPMX20_02769 putative transcriptional regulatory protein YebC 0.60 MPMX20_04627 Ribosomal RNA small subunit methyltransferase G low > 85
Escherichia coli ECRC62 0.71 BNILDI_15490 putative transcriptional regulatory protein YebC 0.59 BNILDI_04600 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 75
Escherichia coli BL21 0.71 ECD_01835 UPF0082 family protein 0.59 ECD_03624 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF1645 FIG000859: hypothetical protein YebC 0.60 GFF1717 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB low > 78
Escherichia coli ECRC102 0.71 NIAGMN_01805 putative transcriptional regulatory protein YebC 0.59 NIAGMN_12545 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Escherichia coli BW25113 0.71 b1864 yebC hypothetical protein (NCBI) 0.59 b3740 gidB glucose-inhibited division protein B (NCBI) low > 76
Klebsiella pneumoniae MKP103 0.71 KDGMDA_25425 putative transcriptional regulatory protein KPK_1906 0.61 KDGMDA_08835 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.52 3
Erwinia tracheiphila HP pepo 2.2 0.70 IJEDHG_22125 tACO1 YebC/PmpR family DNA-binding transcriptional regulator 0.59 IJEDHG_09155 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Erwinia tracheiphila SCR3 0.70 LU632_RS13425 YebC/PmpR family DNA-binding transcriptional regulator 0.60 LU632_RS24810 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 73
Klebsiella michiganensis M5al 0.70 BWI76_RS18160 YebC/PmpR family DNA-binding transcriptional regulator 0.62 BWI76_RS00225 16S rRNA methyltransferase G — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_1407 Protein of unknown function DUF28 0.44 Psyr_5131 16S rRNA m(7)G-527 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_1407 Protein of unknown function DUF28 0.44 Psyr_5131 16S rRNA m(7)G-527 methyltransferase low > 86
Pseudomonas sp. DMC3 0.69 GFF5187 Transcriptional regulatory protein PmpR 0.40 GFF568 Ribosomal RNA small subunit methyltransferase G low > 89
Pseudomonas sp. RS175 0.69 PFR28_03415 Transcriptional regulatory protein PmpR 0.42 PFR28_04586 Ribosomal RNA small subunit methyltransferase G low > 88
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_18010 hypothetical protein 0.42 AO356_11670 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 104
Pseudomonas sp. SVBP6 0.69 COO64_RS20085 YebC/PmpR family DNA-binding transcriptional regulator 0.39 COO64_RS02075 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 93
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_5534 FIG000859: hypothetical protein YebC 0.42 Pf6N2E2_4204 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB low > 103
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1850 FIG000859: hypothetical protein YebC 0.42 PfGW456L13_672 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB low > 87
Pseudomonas sp. BP01 0.67 JOY50_RS01830 YebC/PmpR family DNA-binding transcriptional regulator 0.42 JOY50_RS08385 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 84
Pseudomonas stutzeri RCH2 0.67 Psest_1494 DNA-binding regulatory protein, YebC/PmpR family 0.40 Psest_4364 16S rRNA (guanine(527)-N(7))-methyltransferase GidB — —
Pseudomonas aeruginosa PA14 0.66 IKLFDK_04360 YebC/PmpR family DNA-binding transcriptional regulator 0.43 IKLFDK_25590 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 98
Pseudomonas aeruginosa MRSN321 0.66 DY961_RS07610 YebC/PmpR family DNA-binding transcriptional regulator 0.43 DY961_RS26160 rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 100
Pseudomonas aeruginosa PUPa3 0.66 DQ20_RS45180 YebC/PmpR family DNA-binding transcriptional regulator 0.43 DQ20_RS58580 rsmG;go_component=cellular_component|0005575||IEA;go_function=methyltransferase 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Pseudomonas putida KT2440 0.66 PP_1214 putative transcriptional regulatory protein 0.43 PP_0003 16S RNA methyltransferase low > 96
Pseudomonas fluorescens FW300-N1B4 0.66 Pf1N1B4_640 FIG000859: hypothetical protein YebC 0.41 Pf1N1B4_1935 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_03595 hypothetical protein 0.41 AO353_10440 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 101
Marinobacter adhaerens HP15 0.65 HP15_2043 protein YebC 0.46 HP15_3689 glucose-inhibited division protein B low > 73
Pseudomonas lactucae CFBP13502 0.65 GEMAOFIL_04644 Transcriptional regulatory protein PmpR 0.37 GEMAOFIL_00173 Ribosomal RNA small subunit methyltransferase G low > 96
Pseudomonas segetis P6 0.65 ACVTMO_RS08345 YebC/PmpR family DNA-binding transcriptional regulator 0.45 ACVTMO_RS01200 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 75
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS24100 YebC/PmpR family DNA-binding transcriptional regulator 0.38 PFLU_RS30170 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 109
Pseudomonas simiae WCS417 0.64 PS417_22460 hypothetical protein 0.38 PS417_28515 16S rRNA methyltransferase — —
Pseudomonas fluorescens SBW25 0.64 PFLU_RS24100 YebC/PmpR family DNA-binding transcriptional regulator 0.38 PFLU_RS30170 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 109
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1123 DNA-binding regulatory protein, YebC/PmpR family 0.37 B158DRAFT_0378 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) low > 40
Pseudomonas sp. S08-1 0.63 OH686_19120 Probable transcriptional regulatory protein YebC 0.42 OH686_12665 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 80
Pseudomonas orientalis W4I3 0.61 QF045_RS24625 YebC/PmpR family DNA-binding transcriptional regulator 0.40 QF045_RS02900 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 93
Acinetobacter baumannii LAC-4 0.60 RR41_RS11700 YebC/PmpR family DNA-binding transcriptional regulator 0.36 RR41_RS12025 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Acinetobacter radioresistens SK82 0.58 MPMX26_01851 putative transcriptional regulatory protein YebC 0.35 MPMX26_01214 Ribosomal RNA small subunit methyltransferase G low > 36
Dechlorosoma suillum PS 0.56 Dsui_0489 DNA-binding regulatory protein, YebC/PmpR family 0.32 Dsui_0847 16S rRNA (guanine(527)-N(7))-methyltransferase GidB low > 51
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS04735 hypothetical protein 0.30 RR42_RS20210 16S rRNA methyltransferase low > 128
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS06410 transcriptional regulator 0.40 BPHYT_RS19435 16S rRNA methyltransferase low > 109
Paraburkholderia graminis OAS925 0.54 ABIE53_001546 YebC/PmpR family DNA-binding regulatory protein 0.40 ABIE53_000263 16S rRNA (guanine527-N7)-methyltransferase low > 113
Fusobacterium nucleatum SB010 0.54 HUW76_01460 YebC/PmpR family DNA-binding transcriptional regulator 0.18 HUW76_10165 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 35
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04522 DNA-binding regulatory protein, YebC/PmpR family 0.39 H281DRAFT_02386 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) — —
Ralstonia solanacearum PSI07 0.54 RPSI07_RS13685 YebC/PmpR family DNA-binding transcriptional regulator 0.32 RPSI07_RS08415 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Ralstonia solanacearum UW163 0.54 UW163_RS10130 YebC/PmpR family DNA-binding transcriptional regulator 0.31 UW163_RS04750 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Ralstonia solanacearum GMI1000 0.54 RS_RS10990 YebC/PmpR family DNA-binding transcriptional regulator 0.32 RS_RS16670 ribosomal RNA small subunit methyltransferase G — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS03540 YebC/PmpR family DNA-binding transcriptional regulator 0.31 RALBFv3_RS08860 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF4523 FIG000859: hypothetical protein YebC 0.28 GFF2017 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB low > 90
Castellaniella sp019104865 MT123 0.53 ABCV34_RS02555 YebC/PmpR family DNA-binding transcriptional regulator 0.33 ABCV34_RS11720 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 48
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS15405 YebC/PmpR family DNA-binding transcriptional regulator 0.32 ABZR87_RS04120 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.40 66
Lysobacter sp. OAE881 0.53 ABIE51_RS05035 YebC/PmpR family DNA-binding transcriptional regulator 0.35 ABIE51_RS01740 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 62
Methylophilus sp. DMC18 0.53 GFF2324 Transcriptional regulatory protein PmpR 0.35 GFF2101 Ribosomal RNA small subunit methyltransferase G low > 43
Variovorax sp. SCN45 0.52 GFF303 Probable transcriptional regulatory protein YebC 0.31 GFF3337 16S rRNA (guanine(527)-N(7))-methyltransferase (EC 2.1.1.170) low > 127
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS24395 YebC/PmpR family DNA-binding transcriptional regulator 0.41 QEN71_RS29340 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 153
Variovorax sp. OAS795 0.52 ABID97_RS16740 YebC/PmpR family DNA-binding transcriptional regulator 0.33 ABID97_RS02910 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 91
Acidovorax sp. GW101-3H11 0.50 Ac3H11_2422 FIG000859: hypothetical protein 0.33 Ac3H11_4955 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB — —
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.1434.1 FIG000859: hypothetical protein YebC 0.31 Xcc-8004.5135.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU2259 conserved hypothetical protein TIGR01033 (TIGR) 0.12 DVU1250 gidB methyltransferase GidB (TIGR) 0.48 49
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS04920 YebC/PmpR family DNA-binding transcriptional regulator 0.44 LRK54_RS08680 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS04700 YebC/PmpR family DNA-binding transcriptional regulator 0.44 LRK55_RS08445 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 63
Magnetospirillum magneticum AMB-1 0.44 AMB_RS16265 YebC/PmpR family DNA-binding transcriptional regulator 0.16 AMB_RS00015 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS05110 YebC/PmpR family DNA-binding transcriptional regulator 0.43 LRK53_RS02455 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 59
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_01830 tACO1 YebC/PmpR family DNA-binding transcriptional regulator 0.42 OKGIIK_15445 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 53
Pontibacter actiniarum KMM 6156, DSM 19842 0.41 CA264_01650 YebC/PmpR family DNA-binding transcriptional regulator 0.16 CA264_00675 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 74
Rhodospirillum rubrum S1H 0.41 Rru_A1086 hypothetical protein (RefSeq) 0.14 Rru_A3626 Glucose inhibited division protein (NCBI) low > 58
Azospirillum brasilense Sp245 0.41 AZOBR_RS09035 transcriptional regulator 0.15 AZOBR_RS01815 16S rRNA methyltransferase low > 97
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS10850 YebC/PmpR family DNA-binding transcriptional regulator 0.42 ABZR86_RS14875 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Azospirillum sp. SherDot2 0.40 MPMX19_00695 putative transcriptional regulatory protein 0.14 MPMX19_02570 Ribosomal RNA small subunit methyltransferase G — —
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS15840 YebC/PmpR family DNA-binding transcriptional regulator 0.13 A4249_RS13710 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_03352 YebC/PmpR transcriptional regulator 0.13 CCNA_03870 methyltransferase GidB low > 67
Caulobacter crescentus NA1000 0.35 CCNA_03352 YebC/PmpR transcriptional regulator 0.13 CCNA_03870 methyltransferase GidB low > 66
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1239 DNA-binding regulatory protein, YebC/PmpR family 0.22 Echvi_2046 16S rRNA (guanine(527)-N(7))-methyltransferase GidB low > 79

Not shown: 25 genomes with orthologs for SO2432 only; 2 genomes with orthologs for SO4757 only