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  • Top cofit genes for RR42_RS07590 from Cupriavidus basilensis FW507-4G11

    pseudouridine synthase
    SEED: Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
    KEGG: ribosomal large subunit pseudouridine synthase D

    Rank Hit Name Description Conserved? Cofitness  
    1 RR42_RS12835 tRNA pseudouridine synthase B 0.75 0.53
    2 RR42_RS05485 polynucleotide phosphorylase/polyadenylase no 0.45
    3 RR42_RS15625 tRNA (guanine-N7)-methyltransferase 0.76 0.45
    4 RR42_RS13065 ribonuclease R 0.60 0.43
    5 RR42_RS04890 ribonuclease PH 0.68 0.42
    6 RR42_RS15020 (2Fe-2S)-binding protein 0.73 0.39
    7 RR42_RS14685 ABC transporter ATP-binding protein no 0.39
    8 RR42_RS17235 poly(A) polymerase 0.45 0.37
    9 RR42_RS22760 GntR family transcriptional regulator no 0.37
    10 RR42_RS26235 GntR family transcriptional regulator no 0.37
    11 RR42_RS06270 cupin 0.67 0.36
    12 RR42_RS14985 30S ribosomal protein S21 no 0.36
    13 RR42_RS18365 GTP-binding protein 0.81 0.36
    14 RR42_RS04345 iron ABC transporter permease 0.35 0.35
    15 RR42_RS22895 5-oxoprolinase no 0.35
    16 RR42_RS11370 ABC transporter ATP-binding protein 0.42 0.35
    17 RR42_RS20210 16S rRNA methyltransferase 0.75 0.35
    18 RR42_RS22890 TetR family transcriptional regulator no 0.35
    19 RR42_RS17205 DNA mismatch repair protein no 0.34
    20 RR42_RS22910 nitrate ABC transporter ATPase no 0.34

    Or look for negative cofitness