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  • Top cofit genes for Psyr_3733 from Pseudomonas syringae pv. syringae B728a

    Outer membrane autotransporter barrel
    SEED: Outer membrane stress sensor protease DegS
    KEGG: subtilase-type serine protease

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_4973 hypothetical protein no 0.44
    2 Psyr_0816 conserved hypothetical protein no 0.44
    3 Psyr_3535 conserved hypothetical protein 0.31 0.43
    4 Psyr_4216 regulatory protein, LuxR 0.19 0.41
    5 Psyr_4214 Binding-protein-dependent transport systems inner membrane component no 0.41
    6 Psyr_3858 Nucleoside-specific channel-forming protein, Tsx no 0.40
    7 Psyr_4010 Citrate-proton symport no 0.39
    8 Psyr_4998 hypothetical protein no 0.39
    9 Psyr_0971 conserved hypothetical protein 0.30 0.38
    10 Psyr_0343 hypothetical protein no 0.37
    11 Psyr_2732 conserved hypothetical protein; putative signal peptide no 0.37
    12 Psyr_0918 ABC transporter no 0.36
    13 Psyr_3329 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) no 0.36
    14 Psyr_4997 YD repeat protein no 0.35
    15 Psyr_5044 Aldose 1-epimerase no 0.35
    16 Psyr_4049 lyso-ornithine lipid acyltransferase no 0.34
    17 Psyr_2959 Binding-protein-dependent transport systems inner membrane component no 0.34
    18 Psyr_4019 H-NS family protein MvaT no 0.34
    19 Psyr_3592 Nitroreductase 0.24 0.33
    20 Psyr_3251 Protein of unknown function DUF6 no 0.33

    Or look for negative cofitness