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  • Top cofit genes for Psyr_3011 from Pseudomonas syringae pv. syringae B728a

    Helix-turn-helix, Fis-type
    SEED: Sigma-54 dependent transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1169 nucleoside-binding protein no 0.40
    2 Psyr_4669 pyrroloquinoline quinone synthesis related protease (pqqF), Metallo peptidase, MEROPS family M16A 0.15 0.38
    3 Psyr_4244 hypothetical protein no 0.37
    4 Psyr_2681 gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03 0.40 0.36
    5 Psyr_1381 conserved hypothetical protein no 0.36
    6 Psyr_1104 Heme oxygenase no 0.34
    7 Psyr_5019 Acetyl-CoA hydrolase no 0.33
    8 Psyr_1073 amino acid ABC transporter membrane protein 1, PAAT family 0.50 0.33
    9 Psyr_0814 Protein of unknown function DUF124 no 0.33
    10 Psyr_4115 phosphoheptose isomerase no 0.32
    11 Psyr_4496 outer membrane transport energization protein TonB no 0.32
    12 Psyr_1800 transcriptional regulator, LysR family no 0.32
    13 Psyr_1468 hypothetical protein no 0.31
    14 Psyr_0615 conserved hypothetical protein no 0.31
    15 Psyr_1179 Oligopeptide transporter OPT superfamily no 0.31
    16 Psyr_0809 stress protein no 0.31
    17 Psyr_4158 conserved hypothetical protein no 0.31
    18 Psyr_1256 carboxyphosphonoenolpyruvate phosphonomutase no 0.31
    19 Psyr_3181 Arginyltransferase 0.26 0.31
    20 Psyr_2074 ketopantoate reductase 0.47 0.30

    Or look for negative cofitness