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Cofit
Protein
Homologs
Top cofit genes for Psyr_1198 from
Pseudomonas syringae pv. syringae B728a
type III secretion protein HrpF
SEED: HrpF
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Psyr
_1200
outer-membrane type III secretion protein HrcC
no
0.76
2
Psyr
_1195
type III secretion apparatus lipoprotein, YscJ/HrcJ family
no
0.74
3
Psyr
_1205
type III secretion protein HrcU
no
0.74
4
Psyr
_1208
type III secretion protein HrcR
no
0.73
5
Psyr
_1210
type III secretion protein HrcQa
no
0.71
6
Psyr
_1213
type III secretion cytoplasmic ATPase HrcN
no
0.71
7
Psyr
_3958
RNA polymerase, sigma-24 subunit, RpoE
no
0.70
8
Psyr
_1215
Type III secretion protein HrcV
no
0.70
9
Psyr
_1191
type III transcriptional regulator HrpS
no
0.69
10
Psyr
_4130
Peptidase S1, chymotrypsin:PDZ/DHR/GLGF
no
0.68
11
Psyr
_1216
type III secretion outer membrane protein PopN
no
0.67
12
Psyr
_1206
type III secretion protein HrcT
no
0.67
13
Psyr
_1190
type III transcriptional regulator HrpR
no
0.66
14
Psyr
_1218
type III helper protein HrpK1
no
0.64
15
Psyr
_1212
type III secretion protein HrpO
no
0.64
16
Psyr
_1059
alginate export porin
no
0.63
17
Psyr
_1217
Sigma-70 region 2:Sigma-70 region 4
no
0.62
18
Psyr
_1197
type III secretion protein HrpE
no
0.61
19
Psyr
_1211
type III secretion protein HrpP
no
0.61
20
Psyr
_2608
Amino acid adenylation
no
0.60
Or look for
negative cofitness