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  • Top cofit genes for Psyr_1190 from Pseudomonas syringae pv. syringae B728a

    type III transcriptional regulator HrpR
    SEED: Pathogenicity locus probable regulatory protein hrpR

    Rank Hit Name Description Conserved? Cofitness  
    1 Psyr_1208 type III secretion protein HrcR 0.75 0.84
    2 Psyr_1215 Type III secretion protein HrcV 0.92 0.81
    3 Psyr_1213 type III secretion cytoplasmic ATPase HrcN 0.85 0.81
    4 Psyr_1205 type III secretion protein HrcU 0.61 0.80
    5 Psyr_1195 type III secretion apparatus lipoprotein, YscJ/HrcJ family 0.70 0.80
    6 Psyr_1200 outer-membrane type III secretion protein HrcC 0.75 0.79
    7 Psyr_1191 type III transcriptional regulator HrpS 0.70 0.79
    8 Psyr_1216 type III secretion outer membrane protein PopN 0.94 0.78
    9 Psyr_1212 type III secretion protein HrpO 0.63 0.75
    10 Psyr_1210 type III secretion protein HrcQa no 0.75
    11 Psyr_1206 type III secretion protein HrcT 0.83 0.75
    12 Psyr_1218 type III helper protein HrpK1 0.64 0.71
    13 Psyr_1197 type III secretion protein HrpE 0.61 0.71
    14 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE 0.65 0.69
    15 Psyr_1211 type III secretion protein HrpP no 0.69
    16 Psyr_1217 Sigma-70 region 2:Sigma-70 region 4 0.50 0.67
    17 Psyr_1198 type III secretion protein HrpF no 0.66
    18 Psyr_4130 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF no 0.64
    19 Psyr_2616 Amino acid adenylation 0.75 0.64
    20 Psyr_1350 site-2 protease, Metallo peptidase, MEROPS family M50B 0.67 0.64

    Or look for negative cofitness