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  • Top cofit genes for Pf6N2E2_823 from Pseudomonas fluorescens FW300-N2E2

    Outer membrane protein OprN
    SEED: Outer membrane protein OprN

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_824 Multidrug efflux transporter MexF 0.98 0.64
    2 Pf6N2E2_825 Multidrug efflux membrane fusion protein MexE 0.93 0.61
    3 Pf6N2E2_1055 Transcriptional regulator MexT 0.38 0.50
    4 Pf6N2E2_5482 FIG00954888: hypothetical protein no 0.47
    5 Pf6N2E2_5481 Transcriptional regulator, AraC family no 0.43
    6 Pf6N2E2_2280 COG0553: Superfamily II DNA/RNA helicases, SNF2 family no 0.39
    7 Pf6N2E2_5524 Outer membrane porin, OprD family 0.57 0.31
    8 Pf6N2E2_658 sensor histidine kinase no 0.29
    9 Pf6N2E2_2084 sensory box histidine kinase/response regulator no 0.25
    10 Pf6N2E2_4636 periplasmic binding protein, putative no 0.24
    11 Pf6N2E2_5006 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) no 0.24
    12 Pf6N2E2_1563 Transcriptional regulator, AraC family no 0.24
    13 Pf6N2E2_3060 Outer membrane protein H precursor no 0.23
    14 Pf6N2E2_5160 C4-type zinc finger protein, DksA/TraR family 0.33 0.22
    15 Pf6N2E2_2944 Collagen pro alpha-chain precursor no 0.22
    16 Pf6N2E2_2852 GGDEF domain/EAL domain protein 0.80 0.22
    17 Pf6N2E2_4009 GGDEF domain protein no 0.21
    18 Pf6N2E2_3677 Sensory box/GGDEF family protein 0.26 0.21
    19 Pf6N2E2_2885 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) no 0.21
    20 Pf6N2E2_5976 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) no 0.21

    Or look for negative cofitness