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  • Top cofit genes for Pf6N2E2_5076 from Pseudomonas fluorescens FW300-N2E2

    DNA repair protein RadA
    SEED: DNA repair protein RadA
    KEGG: DNA repair protein RadA/Sms

    Rank Hit Name Description Conserved? Cofitness  
    1 Pf6N2E2_3370 DNA repair protein RecN 0.93 0.54
    2 Pf6N2E2_2992 Regulatory protein RecX 0.81 0.48
    3 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.83 0.45
    4 Pf6N2E2_2523 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) 0.80 0.44
    5 Pf6N2E2_4888 Excinuclease ABC subunit A 0.94 0.44
    6 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.82 0.44
    7 Pf6N2E2_52 Excinuclease ABC subunit B 0.92 0.43
    8 Pf6N2E2_3168 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) 0.82 0.40
    9 Pf6N2E2_2325 Recombination protein RecR 0.81 0.38
    10 Pf6N2E2_2021 Excinuclease ABC subunit C 0.91 0.36
    11 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.85 0.35
    12 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.80 0.35
    13 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.91 0.33
    14 Pf6N2E2_1225 DinG family ATP-dependent helicase CPE1197 0.52 0.29
    15 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.86 0.28
    16 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.84 0.27
    17 Pf6N2E2_5430 Transglycosylase, Slt family 0.42 0.25
    18 Pf6N2E2_4174 Methionine ABC transporter substrate-binding protein 0.27 0.25
    19 Pf6N2E2_4474 FIG006231: RNA-binding protein 0.77 0.25
    20 Pf6N2E2_5414 Nucleoid-associated protein 0.70 0.24

    Or look for negative cofitness